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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1527#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence
[TCTGTGTCGCTCTGCAGACGAGCCGCTCCTTCCTCTGCTGCCGTAAAGATAAAACAACTCGGATAAGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAAGGAGCCGACGGGAAGTGGCAGTTGGTCCACAGGAACGAGGTGGTGAAGAACAACCTGAATCCCACCTGGAAGAAGTTCACCGTCCCTCTCCAGACGTTCTGCTCCAGCGACCTGGAAAGACCTCTGAAGGTGGACTGTCACGACTACGACAGCGACGGACCTCATGACCTCATCGGTTCCTTCACCACTAAAGTGTCTGAGCTCCAGAAGACAGCCCATGGCTCA]
[+] EMBL CA588204 [TCTGTGTCGCTCTGCAGACGAGCCGCTCCTTCCTCTGCTGCCGTAAAGATAAAACAACTCGGATAAGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAAGGAGCCGACGGGAAGTGGCAGTTGGTCCACAGGACCGAGGTGGTGAAGAACAACCTGAATCCCACCTGGAAGAAGTTCACCGTCCCTCTCCAGACGTTCTGCTCCAGCGACCTGGAAAGACCTCTGAAGGTGGACTGTCACGACTACGACAGCGACGGACCTCATGACCTCATCGGTTCCTTCACCACTAAAGTGTCTGAGCTCCAGAAGACAGCCCATGGCTCA]
[+] EMBL CA588920 [ CTGCAGACGAGCCGCTCCTTCCTCTGCTG TGTAAAGATAAAACAACTCGGATAAGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAAGGACCCGACGGGAAGTGGCAGTTGGTCCACAGGAACGAAGTGGTGAAAAAC ]
consensusID : consensus_1527#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[ACGAGAGACGAGAGGAGAGAAGAGTAGAGAACATTAATGAATTAAACTTCATTGTCTTTCTTGACAGATTTCTCGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAA]
[+] EMBL BU804600 [ACGAGAGACGAGAGGAGAGAAGAGTAGAGAACATTAATGAATTAAACTTCATTGTCTTTCTTGACAGATTTCTCGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTCTAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAGCTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGACCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAAGCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGGAGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCAGCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGACGGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTTTGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1527#0 TCTGTGTCGCTCTGCAGACGAGCCGCTCCTTCCTCTGCTGCCGTAAAGATAA--AACAAC 58
consensus_1527#1 -ACGAGAGACGAGAGGAGAGAAGAGTAGAGAACATTAATGAATTAAACTTCATTGTCTTT 59
* * * ** * * * ** **** * * *
consensus_1527#0 TCGGATAA-------GATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTC 111
consensus_1527#1 CTTGACAGATTTCTCGATGGCGGACTGCGTCTCAAAGGTGGAGCTGACGGTCTCCTGTTC 119
** * *********************************************
consensus_1527#0 TAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAG 171
consensus_1527#1 TAACCTGCTGGATAAGGACGTGGGATCAAAGTCTGACCCACTGTGTGTGTTGCTGCAGAG 179
************************************************************
consensus_1527#0 CTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGA 231
consensus_1527#1 CTCAGGGGGAGACAAGTGGACAGAGCTGGGTCGCACGGAGCGTATAAAGAACACGTCCGA 239
************************************************************
consensus_1527#0 CCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAA 291
consensus_1527#1 CCCGTCCTTCAGCCAGCGCCTTCGGCTGGATTATCACTTTGAGGCTGTTCAGAATCTGAA 299
************************************************************
consensus_1527#0 GCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGG 351
consensus_1527#1 GCTGGGGATCTACGACATTGACAACTCCAGCTCTGACCTGGGTGACGATGACTACCTGGG 359
************************************************************
consensus_1527#0 AGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCA 411
consensus_1527#1 AGGACTGGAGGTCACACTTGGCCAGATTGTTTCCAGTAAAACATTGACCAGACCGCTGCA 419
************************************************************
consensus_1527#0 GCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGAC 471
consensus_1527#1 GCTTAAAAAAGGGAAACCTGCCGGCAAAGGAACTATTACTGTAACAGCAGAGGAGATGAC 479
************************************************************
consensus_1527#0 GGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTT 531
consensus_1527#1 GGACAACAGAGCGATTGTTTTGGAGCTGGAGGCCAAAAAACTTGACAAGAAGGACACCTT 539
************************************************************
consensus_1527#0 TGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAAGGAGCCGACGGGAAGTGGCAGTT 591
consensus_1527#1 TGGGAAGTCTGATCCATTCCTGGAGATTTTCAAACAA----------------------- 576
*************************************
consensus_1527#0 GGTCCACAGGAACGAGGTGGTGAAGAACAACCTGAATCCCACCTGGAAGAAGTTCACCGT 651
consensus_1527#1 ------------------------------------------------------------
consensus_1527#0 CCCTCTCCAGACGTTCTGCTCCAGCGACCTGGAAAGACCTCTGAAGGTGGACTGTCACGA 711
consensus_1527#1 ------------------------------------------------------------
consensus_1527#0 CTACGACAGCGACGGACCTCATGACCTCATCGGTTCCTTCACCACTAAAGTGTCTGAGCT 771
consensus_1527#1 ------------------------------------------------------------
consensus_1527#0 CCAGAAGACAGCCCATGGCTCA 793
consensus_1527#1 ----------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |