These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1530#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 642 fasta sequence [CGGCCCTTTGCGTTGCCGTTTGGTTGGGAACGCTGCTAAAGGTACGTACGCGCCACACGGGCAGCAGTTGGGATTTGTGGCTGTTATTTTGTGTGGCATTCAACGCTCAGATGACCGAGTGAGGGGAAAAGTGACGGAGGCACAGGCAGAGATTCACAAGAGGAAAAGCATGAGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATGGCGTCCAAAGGTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGGCAAGCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCATGATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGATCTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAG] [+] EMBL CA589790 [CGGCCCTTTGCGTTGCCGTTTGGTTGGGAACGCTGCTAAAGGTACGTACGCGCCACACGGGCAGCAGTTGGGATTTGTGGCTGTTATTTTGTGTGGCATTCAACGCTCAGATGACCGAGTGAGGGGAAAAGTGACGGATCCACAGGCAGAGATTCACAAGAGGAAAAGCATGTGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATCGCGTCCAAAGTTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGCCAAGCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCATGATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGATCTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAG] [+] EMBL FR0059634 [ TTACCGAGTGAGGGGAAAAGTGACGGAGGCACAGGCAGATATTCACAAGAGGAAAAGCATGAGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGA CCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATGGCGTCCAAAGGTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGAAGTGAGGTACAAGGGCAAGCT ] consensusID : consensus_1530#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 633 fasta sequence [CCTTTGCGCTGCCGTTTGGTTGGGAACGCTGCTAAAGATTCACAAGAGGAAAAGCATGAGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATCGCGTCCAAAGTTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGCCAAGCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCATGATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGATCTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAGCGATCAGGAGTGATTGAGCATGAGCACGCGGTAAACAAGATCTCCTTCATCGCCAGAGATGTGACAGACAACCGGGCATTCGGATACGTGTGCGGCGCCCGAAGG] [+] EMBL CA590774 [CCTTTGCGCTGCCGTTTGGTTGGGAACGCTGCTAAAGATTCACAAGAGGAAAAGCATGAGTGAGTGTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCCCACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGAGAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCCTCCAACCTCTCCCATCGCGTCCAAAGTTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGAAAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGCCAAGCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCATGATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGATCTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAGCGATCAGGAGTGATTGAGCATGAGCACGCGGTAAACAAGATCTCCTTCATCGCCAGAGATGTGACAGACAACCGGGCATTCGGATACGTGTGCGGCGCCCGAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1530#0 CGGCCCTTTGCGTTGCCGTTTGGTTGGGAACGCTGCTAAAGGTACGTACGCGCCACACGG 60 consensus_1530#1 ------------------------------------------------------------ consensus_1530#0 GCAGCAGTTGGGATTTGTGGCTGTTATTTTGTGTGGCATTCAACGCTCAGATGACCGAGT 120 consensus_1530#1 -------------------------------------------------------CCTTT 5 * * consensus_1530#0 GAGGGGAAAAGTGAC-GGAGGCACAGGCAGAGATTCACAAGAGGAAAAGCATGAGTGAGT 179 consensus_1530#1 GCGCTGCCGTTTGGTTGGGAACGCTGCTAAAGATTCACAAGAGGAAAAGCATGAGTGAGT 65 * * * ** ** * * * * ****************************** consensus_1530#0 GTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCC 239 consensus_1530#1 GTTAGGAGTCATCCGCTCACTTGACCTCGCTGACCCCGAACTGCCTGCTTGACCCCCCCC 125 ************************************************************ consensus_1530#0 CACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGA 299 consensus_1530#1 CACCCCTAACCGTCCACTCGTCCATCGAGCCTCACTCGGCGCCATGTCTGCAGAGGTGGA 185 ************************************************************ consensus_1530#0 GAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCC 359 consensus_1530#1 GAACTGCCCGCCAACCCCCAGCGACTCCACTGCCGTGACCACGGCCCCCAATTCCACCCC 245 ************************************************************ consensus_1530#0 TCCAACCTCTCCCATGGCGTCCAAAGGTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGA 419 consensus_1530#1 TCCAACCTCTCCCATCGCGTCCAAAGTTCCATTCAAGAAGGAGAAAAAGAAAGTGTTGGA 305 *************** ********** ********************************* consensus_1530#0 AAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGGCAA 479 consensus_1530#1 AAAGACGGACGAGTACCTGCTGGGCAGGTTTCAAGGAGATGGAGTGAGGTACAAGGCCAA 365 ******************************************************** *** consensus_1530#0 GCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCAT 539 consensus_1530#1 GCTGATCGGCATCGATGACGTTTCAGAGGCCAGAGGAGACAAGATGTGCCAGGACTCCAT 425 ************************************************************ consensus_1530#0 GATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGAT 599 consensus_1530#1 GATGAAACTCAAGGGTATGGCCGTTGCTGCCCGCTCTCAAGGCAAACACAAGCAGAGGAT 485 ************************************************************ consensus_1530#0 CTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAG----------------- 642 consensus_1530#1 CTGGGTCAACATTTCCATGTCGGGCATCAAGATCGTCGACGAGCGATCAGGAGTGATTGA 545 ******************************************* consensus_1530#0 ------------------------------------------------------------ consensus_1530#1 GCATGAGCACGCGGTAAACAAGATCTCCTTCATCGCCAGAGATGTGACAGACAACCGGGC 605 consensus_1530#0 ---------------------------- consensus_1530#1 ATTCGGATACGTGTGCGGCGCCCGAAGG 633 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |