These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1533#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 606 fasta sequence [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGTGCTGGTTCCTACGGCCAGCCTCCA] [+] EMBL BU807512 [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGC TGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATAT ] [+] EMBL CA589715 [ CTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGTGCTGGTTCCTACGGCCAGCCTCCA] consensusID : consensus_1533#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT] [+] EMBL BU807402 [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1533#0 AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCC 60 consensus_1533#1 AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCC 60 ************************************************************ consensus_1533#0 CAAAGTTATGGGCAGTCTACACAG------------------AATTATGGTTCATATGCC 102 consensus_1533#1 CAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCC 120 ************************ *** ************** consensus_1533#0 CAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTAC 162 consensus_1533#1 CAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTAC 180 ************************************************************ consensus_1533#0 CCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCT 222 consensus_1533#1 CCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCT 240 ********************************* ************************** consensus_1533#0 GCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGC 282 consensus_1533#1 GCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGC 300 ************************************************************ consensus_1533#0 TATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCT 342 consensus_1533#1 TATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCT 360 ************************************************************ consensus_1533#0 GCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCA 402 consensus_1533#1 GCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCA 420 ************************************************************ consensus_1533#0 CAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAA 462 consensus_1533#1 CAGGCT------GCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAA 474 ****** ************************************************ consensus_1533#0 GCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCG 522 consensus_1533#1 GCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCG 534 ************************************************************ consensus_1533#0 CAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGT 582 consensus_1533#1 CAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT-------------- 580 ********************************************** consensus_1533#0 GCTGGTTCCTACGGCCAGCCTCCA 606 consensus_1533#1 ------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |