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Takifugu rubripes
cluster # 1533 cluster # 1533       Sequences # 3       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1533#0 length = 606 sequences # 2  
consensus_1533#1 length = 580 sequences # 1  

consensusID : consensus_1533#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 606
fasta sequence
                              [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGTGCTGGTTCCTACGGCCAGCCTCCA]

[+] EMBL BU807512             [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGC      TGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATAT                                    ]
[+] EMBL CA589715             [     CTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGTGCTGGTTCCTACGGCCAGCCTCCA]


>consensus_1533#0 AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCC CAAAGTTATGGGCAGTCTACACAGAATTATGGTTCATATGCCCAACCTGCCACTCCTGCT GATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAG TACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACA CAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCT GCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACT GCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTTACAGTGCCAAC AGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAA CAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAA AGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGTGCTGGTTCCTACGGCCAG CCTCCA



consensusID : consensus_1533#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 580
fasta sequence
                              [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT]

[+] EMBL BU807402             [AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCCCAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCCCAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTACCCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCTGCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGCTATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCTGCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCACAGGCTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT]


>consensus_1533#1 AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCC CAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCC CAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTAC CCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCT GCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGC TATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCT GCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCA CAGGCTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAAGCAGCG TATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCGCAAGGA TATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1533#0      AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCC 60
consensus_1533#1      AGCTCCTACACTCAGGCCAGCACTCAGCAAGGATATGCTTCTTATGCTGGCCAGCCTTCC 60
                      ************************************************************

consensus_1533#0      CAAAGTTATGGGCAGTCTACACAG------------------AATTATGGTTCATATGCC 102
consensus_1533#1      CAAAGTTATGGGCAGTCTACACAGCAGAATTATGGCCAACAGAATCATGGTTCATATGCC 120
                      ************************                  *** **************

consensus_1533#0      CAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTAC 162
consensus_1533#1      CAACCTGCCACTCCTGCTGATGGCGCTTACAGCCAGGCAACACCTACTACTGGAGGTTAC 180
                      ************************************************************

consensus_1533#0      CCACAGCAACAACAACAGTACAGCTCCTCTTACGGCCAACAGGCCTCAGCTGGCTATCCT 222
consensus_1533#1      CCACAGCAACAACAACAGTACAGCTCCTCTTACTGCCAACAGGCCTCAGCTGGCTATCCT 240
                      ********************************* **************************

consensus_1533#0      GCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGC 282
consensus_1533#1      GCTGCCCAATCATCTACACAAAGCTATTCCCAGTCTACCCAGGGTTATGGAGCCAGCGGC 300
                      ************************************************************

consensus_1533#0      TATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCT 342
consensus_1533#1      TATGACACTGCTCCTTCTGCTGCTACTCCAGCTGCTTCGCAGTCTTATGGTAGTCAGTCT 360
                      ************************************************************

consensus_1533#0      GCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCA 402
consensus_1533#1      GCCTATACAGCCCAGACTGCTTACCCTGGATACGGCCAACAAGCCGCTCCCACGGCACCA 420
                      ************************************************************

consensus_1533#0      CAGGCTTACAGTGCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAA 462
consensus_1533#1      CAGGCT------GCCAACAGCCAGCCATCCACTTACAGTCAGAATAATTACTCCCAGCAA 474
                      ******      ************************************************

consensus_1533#0      GCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCG 522
consensus_1533#1      GCAGCGTATGGCCAACAACAGCCAGGATACCAGGCTCAGCAGAGCAGCTACAGCCAGCCG 534
                      ************************************************************

consensus_1533#0      CAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCATATCCCCCCCAGGGT 582
consensus_1533#1      CAAGGATATCCACAACAAAGCCAGCAGCAACAAGCTCCACCTGCAT-------------- 580
                      **********************************************              

consensus_1533#0      GCTGGTTCCTACGGCCAGCCTCCA 606
consensus_1533#1      ------------------------
                                              




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)