These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1540#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 663 fasta sequence [AGCGTGTAAGTAGGAGCACAGTACACAGACGGACAGAGAAATGGACAGAAATCTACAGCAACTGCAGTAACAAGTGCTGACTTGATTAAACACTGGTGATTCAGAGAGAAATAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGCCTGGGAATTACGTGCGCACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCACTGAACGCTTAGCTGTTCTCCACTCCTCCATCTCCGACTCACTCGTAGCAGAGGAGGGAGACCGGGTGAGAGTCTGGCAGAAGGACACCTTTCCAAAGAAAATCTTCTGCGGCTTCAAAGAGAGCCACACCAACAACACCAGCTTCTCCCGTGCACAGAAACCCTGGAGCAAGAAGCTGCAGAAGCTGGAGAAGGTCAGGGCTGCATATCACAAGTCCTGTCAGCAGGAGCAGACGGCCCTCGACAGAGAGAAACAAGCCAACGAAGACGCT] [+] EMBL BU805694 [AGCGTGTAAGTAGGAGCACAGTACACAGACGGACAGAGAAATGGACAGAAATCTACAGCAACTGCAGTAACAAGTGCTGACTTGATTAAACACTGGTGATTCAGAGAGAAATAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGCCTGGGAATTACGTGCACACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCACTGAACGCTTAGCTGTTCTCCACTCCTCCATCTCCGACTCACTCGTAGCAGAGGAGGGAGACCGGGTGAGAGTCTGGCAGAAGGACACCTTTCCAAAGAAAATCTTCTGCGGCTTCAAAGAGAGCCACACCAACAACACCAGCTTCTCCCGTGCACAGAAACCCTGGAGCAAGAAGCTGCAGAAGCTGGAGAAGGTC ] [+] EMBL BU804530 [ AGAGAAATGGACAGAAATCTACAGCAACTGCAGTAACAAGTGCTGACTTGATTAAACACTGGTGATTCAGAGAGAAATAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGCCTGGGAATTACGTGCGCACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCACTGAACGCTTAGCTGTTCTCCACTCCTCCATCTCCGACTCACTCGTAGCAGAGGAGGGAGACCGGGTGAGAGTCTGGCAGAAGGACACCTTTCCAAAGAAAATCTTCTGCGGCTTCAAAGAGAGCCACACCAACAACACCAGCTTCTCCCGTGCACAGAAACCCTGGAGCAAGAAGCTGCAGAAGCTGGAGAAGGTCAGGGCTGCATATCACAAGTCCTGTCAGCAGGAGCAGACGGCCCTCGACAGAGAGAAACAAGCCAACGAAGACGCT] consensusID : consensus_1540#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [CAGAGGGGCACTCGGCCCCTTTCGGCTGGTTTTATAGCCTAATGGCAGGGTGAGAAGAACATGAGCGCGCCTGGTAAAGTGAAGGTCCGTGAGTAGAACGAGGAAGGGATCAAAGTAGAAGAGAGAAAGAAAAGTTCATCTGGGTACCAGGAAGAACATCACAGCTGGGGGGGAGGAGAACATGCAAGAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGGTGAGGATTATATTCACGATCTGTCTGGAGAAATCTTTCAAACTGGTATTCTCACACATTTATTAATATTGCCACTACTAGCCTGGGAATTACGTGCGCACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCCCTGAACGCTTAGCTGTTCTCCACTCCTCC] [+] EMBL BU805441 [CAGAGGGGCACTCGGCCCCTTTCGGCTGGTTTTATAGCCTAATGGCAGGGTGAGAAGAACATGAGCGCGCCTGGTAAAGTGAAGGTCCGTGAGTAGAACGAGGAAGGGATCAAAGTAGAAGAGAGAAAGAAAAGTTCATCTGGGTACCAGGAAGAACATCACAGCTGGGGGGGAGGAGAACATGCAAGAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAAGAAACAGAGCTTCTGGATGGTGAGGATTATATTCACGATCTGTCTGGAGAAATCTTTCAAACTGGTATTCTCACACATTTATTAATATTGCCACTACTAGCCTGGGAATTACGTGCGCACGGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGAGAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAAGTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTTTACCTCCCCTGAACGCTTAGCTGTTCTCCACTCCTCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1540#0 ------------------------------------------------------------ consensus_1540#1 CAGAGGGGCACTCGGCCCCTTTCGGCTGGTTTTATAGCCTAATGGCAGGGTGAGAAGAAC 60 consensus_1540#0 ---AGCGTGTA-AGTAGGAGCACAGTACACAGACGGACAGAGAAATGGACAGAAATCTAC 56 consensus_1540#1 ATGAGCGCGCCTGGTAAAGTGAAGGTCCGTGAGTAGAACGAGGAAGGGATCAAAGTAGAA 120 **** * *** * ** * ** *** ** *** ** * * consensus_1540#0 AGCAACTGCAGTAA--CAAGTGCTGACTTGATTAAACA------CTGGTGATTCAGAGA- 107 consensus_1540#1 GAGAGAAAGAAAAGTTCATCTGGGTACCAGGAAGAACATCACAGCTGGGGGGGAGGAGAA 180 * * * ** ** ** * **** **** * **** consensus_1540#0 ---GAAATAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAA 164 consensus_1540#1 CATGCAAGAGACGCGTTGAATAATGGCGAGTCTACCTAAGGACCCTCCAGAGGATCCCAA 240 * ** **************************************************** consensus_1540#0 GAAACAGAGCTTCTGGATG----------------------------------------- 183 consensus_1540#1 GAAACAGAGCTTCTGGATGGTGAGGATTATATTCACGATCTGTCTGGAGAAATCTTTCAA 300 ******************* consensus_1540#0 ----------------------------------------CCTGGGAATTACGTGCGCAC 203 consensus_1540#1 ACTGGTATTCTCACACATTTATTAATATTGCCACTACTAGCCTGGGAATTACGTGCGCAC 360 ******************** consensus_1540#0 GGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGA 263 consensus_1540#1 GGTGCACCGGACAGAGCAGTCCTTCCAGGCCTGCAACGATATTGTGGCCTGTTTTGTGGA 420 ************************************************************ consensus_1540#0 GAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAA 323 consensus_1540#1 GAGGGCAAAGGTGGAGAAACAATACGCCCAACAGCTCAACCAGTGGAGCAACAAATGGAA 480 ************************************************************ consensus_1540#0 GTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTT 383 consensus_1540#1 GTCCATTGTAGATTCCCGGCCACTTTATGGTTCACTGATGAAGGCGTGGCAGTGTTTCTT 540 ************************************************************ consensus_1540#0 TACCTCCACTGAACGCTTAGCTGTTCTCCACTCCTCCATCTCCGACTCACTCGTAGCAGA 443 consensus_1540#1 TACCTCCCCTGAACGCTTAGCTGTTCTCCACTCCTCC----------------------- 577 ******* ***************************** consensus_1540#0 GGAGGGAGACCGGGTGAGAGTCTGGCAGAAGGACACCTTTCCAAAGAAAATCTTCTGCGG 503 consensus_1540#1 ------------------------------------------------------------ consensus_1540#0 CTTCAAAGAGAGCCACACCAACAACACCAGCTTCTCCCGTGCACAGAAACCCTGGAGCAA 563 consensus_1540#1 ------------------------------------------------------------ consensus_1540#0 GAAGCTGCAGAAGCTGGAGAAGGTCAGGGCTGCATATCACAAGTCCTGTCAGCAGGAGCA 623 consensus_1540#1 ------------------------------------------------------------ consensus_1540#0 GACGGCCCTCGACAGAGAGAAACAAGCCAACGAAGACGCT 663 consensus_1540#1 ---------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |