These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1569#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 282 fasta sequence [GGGCCCTATCCTTTGCATTTTTCAGTGTGGTGTGTCCTGTGGTGCTTTGCATCACCCAAGACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGTAAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGGTAAATGCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGTAAAGGATTTTCTTATTGCATAATAAATGCATAGCTTTGTGTG] [+] EMBL FR0057990 [GGGCCCTATCCTTTGCATTTTTCAGTGTGGTGTGTCCTGTGGTGCTTTGCATCACCCATGACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGTAAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGGTAAATGCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGTAAAGGATTTTCTTATTGCATAATAAATGCATAGCTTTGT ] [+] EMBL CA329928 [ AAGACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGTAAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGCTAAATGCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGTAAAGGATTTTCTTATTGCATAATAAATGTATAGCTTTGTGTG] consensusID : consensus_1569#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [CTTTTATATCAGAACATCACGGAAGGGCATCTGGGGCTCATTTTTTTTTAACTTTCATTCCCTCCCTAAATTCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACACTATACCAACTATCTGTAAAGCATTTTCTTATTGCATAATAAATGCATACCTTTGTGCCATCTCATACATTTGTC] [+] EMBL FR0062542 [CTTTTATATCAGAACATCACGGAAGGGCATCTGGGGCTCATTTTTTTTTAACTTTCATTCCCTCCCTAAATTCCTCATTGCCATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACACTATACCAACTATCTGTAAAGCATTTTCTTATTGCATAATAAATGCATACCTTTGTGCCATCTCATACATTTGTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1569#0 GGGCCCTATCCTTTGCATTTTTCAGTGTGGTGTGTCCTGTGGTGCTTTGCATCACCCAAG 60 consensus_1569#1 ------------------------------------------------------------ consensus_1569#0 ACCATCAGGAACTCTAACTCATTGTATGTACAACTTTCCTTGCGCATCAAAGCATCACGT 120 consensus_1569#1 --------------------------------------CTTTTATATCAGAACATCACGG 22 *** **** * ******* consensus_1569#0 AAGGTCATCTGAAGTGTCACGTTTTTTTAACTTTCATTGTCTGGGTAAATGCCTCATTGC 180 consensus_1569#1 AAGGGCATCTGGGGC-TCATTTTTTTTTAACTTTCATTCCCTCCCTAAATTCCTCATTGC 81 **** ****** * *** ***************** ** ***** ********* consensus_1569#0 CATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACAGTAAGTCAACTATCTGT 240 consensus_1569#1 CATTCCTTTGCAATTAGTTACTATGTCTTGTTTTGACAACACACTATACCAACTATCTGT 141 ******************************************* ** *********** consensus_1569#0 AAAGGATTTTCTTATTGCATAATAAATGCATAGCTTTGTGTG---------------- 282 consensus_1569#1 AAAGCATTTTCTTATTGCATAATAAATGCATACCTTTGTGCCATCTCATACATTTGTC 199 **** *************************** ******* |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |