These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1020 fasta sequence [GACATATTTAGTCTCTGAATAGATCCGTTCGAGTTCCTTCCATCTTTAAAGATGTCCAGATTTTTAAAGCAGAACACTTTATCTGAACTTGTACAATCTTTGTTGTTGAACTGTTTCTTAAAGTGAGCGTTTAACTTCATGAAACCTTAGAACCGACCATGACTCTTTGATGTCTCCACATCGTAGCAACCCTACCTGAGGGTATTTTACTGCTAGCTGTAGCATCTAATGCTACTGCTAGCAGTAGCATCTAATGCTACTGGCTATTTTCCACTCGTGCCAACACAATAATGTTTTCTTTAGGGTGGTTTTAATCCATATTGATTTGATCCGTCATCTCTCTGTACCTCGAGTGATGACGTCAGCTGCAAGCGGGTCAGAAATGAGGAACCTTCATGCTGGAGCTGCGGTTGCCAGTCGGGACGCTTTCAGAGAGGCACCAATGTGCTAAAGTAGAAGCGGTTGTTGCAACTGACACGCCGCGAGCTCGATGACCACCAAACAAGTGACGTGCAGGTATTTCCTGCATGGTGTGTGCAGGGAGGGCAACCATTGCCAGTTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTAAAGACAGGAGCAACAGCCACCTCCTCCACACACCTGAGCAGCATGTTCTGCTTCAGTGGCCTCATCGTAGCGTTGTGCTTCCAGCACTTTCTTTGAGGATTCAGGTGTTTCTGTGTGTGTAGGTATGACCATGTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGGGATGGCGCCTCCACCAGAGGTGCGGCAAAGAAGACGTTTGTCCATCAAGAAAGAGAGAACATGTTCAGAGCTCCAGCAGAAAGCTTTGGAGCAGACGTCATGGCTCCAGCCCCTCACACATACGTGGATGCCATCAGGACGGGTCTAAGTTCTTCATCACAAGATCACAGTCAGATTGAG] [+] EMBL CA589892 [GACATATTTAGTCTCTGAATAGATCCGTTCGAGTTCCTTCCATCTTTAAAGATGTCCAGATTTTTAAAGCAGAACACTTTATCTGAACTTGTACAATCTTTGTTGTTGAACTGTTTCTTAAAGTGAGCGTTTAACTTCATGAAACCTTAGAACCGACCATGACTCTTTGATGTCTCCACATCGTAGCAACCCTACCTGAGGGTATTTTACTGCTAGCTGTAGCATCTAATGCTACTGCTAGCAGTAGCATCTAATGCTACTGGCTATTTTCCACTCGTGCCAACACAATAATGTTTTCTTTAGGGTGGTTTTAATCCATATTGATTTGATCCGTCATCTCTCTGTACCTCGAGTGATGACGTCAGCTGCAAGCGGGTCAGAAATGAGGAACCTTCATGCTGGAGCTGCGGTTGCCAGTCGGGACGCTTTCAGAGAGGCACCAATGTGCTAAAGTAGAAGCGGTTGTTGCAACTGACACGCCGCGAGCTCGATGACCACCAAACAAGTGACGTGCAGGTATTTCCTGCATGGTGTGTGCAGGGAGGGCAACCATTGCCAGTTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGG ] [+] EMBL CA590591 [ GAAGCGGTTGTTGCAACTGACACGCCGCGAGCTCGATGACCACCAAACAAGTGACGTGCAGGTATTTCCTGCATGGTGTGTGCAGGGAGGGCAACCATTGCCAGTTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTAAAGACAGGAGCAACAGCCACCTCCTCCACACACCTGAGCAGCATGTTCTGCTTCAGTGGCCTCATCGTAGCGTTGTGCTTCCAGCACTTTCTTTGAGGATTCAGGTGTTTCTGTGTGTGTAGGTATGACCATGTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGGGATGGCGCCTCCACCAGAGGTGCGGCAAAGAAGACGTTTGTCCATCAAGAAAGAGAGAACATGTTCAGAGCTCCAGCAGAAAGCTTTGGAGCAGACGTCATGGCTCCAGCCCCTCACACATACGTGGATGCCATCAGGACGGGTCTAAGTTCTTCATCACAAGATCACAGTCAGATTGAG] consensusID : consensus_1571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 292 fasta sequence [TTGTGTGCAGGGAGGGCAACCATTGCCAGGTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTATGACCATGTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGGGATGGCGCCTCCACCAGAGTGGCGGAAAGAAGACGTTTGTGCATCAAGAAAGAGAGAACATGTGCAGAGCTGCAGCAGAAAGCTTTGGGGCGGACGTCATGGCTCCA] [+] EMBL FR0062504 [TTGTGTGCAGGGAGGGCAACCATTGCCAGGTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTGTAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTATGACCATGTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGGGATGGCGCCTCCACCAGAGTGGCGGAAAGAAGACGTTTGTGCATCAAGAAAGAGAGAACATGTGCAGAGCTGCAGCAGAAAGCTTTGGGGCGGACGTCATGGCTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1571#0 GACATATTTAGTCTCTGAATAGATCCGTTCGAGTTCCTTCCATCTTTAAAGATGTCCAGA 60 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 TTTTTAAAGCAGAACACTTTATCTGAACTTGTACAATCTTTGTTGTTGAACTGTTTCTTA 120 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 AAGTGAGCGTTTAACTTCATGAAACCTTAGAACCGACCATGACTCTTTGATGTCTCCACA 180 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 TCGTAGCAACCCTACCTGAGGGTATTTTACTGCTAGCTGTAGCATCTAATGCTACTGCTA 240 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 GCAGTAGCATCTAATGCTACTGGCTATTTTCCACTCGTGCCAACACAATAATGTTTTCTT 300 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 TAGGGTGGTTTTAATCCATATTGATTTGATCCGTCATCTCTCTGTACCTCGAGTGATGAC 360 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 GTCAGCTGCAAGCGGGTCAGAAATGAGGAACCTTCATGCTGGAGCTGCGGTTGCCAGTCG 420 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 GGACGCTTTCAGAGAGGCACCAATGTGCTAAAGTAGAAGCGGTTGTTGCAACTGACACGC 480 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 CGCGAGCTCGATGACCACCAAACAAGTGACGTGCAGGTATTTCCTGCATGGTGTGTGCAG 540 consensus_1571#1 --------------------------------------------------TTGTGTGCAG 10 ********* consensus_1571#0 GGAGGGCAACCATTGCCAGTTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTG 600 consensus_1571#1 GGAGGGCAACCATTGCCAGGTCTCCCACGACCCCTCCAGCAGCAAACCCTCCACCATCTG 70 ******************* **************************************** consensus_1571#0 TAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTAAAGACAGGAGCA 660 consensus_1571#1 TAAGTTCTACCAGAGGGGAACATGTGCATATGGGGAACGCTGCAGGTA------------ 118 ************************************************ consensus_1571#0 ACAGCCACCTCCTCCACACACCTGAGCAGCATGTTCTGCTTCAGTGGCCTCATCGTAGCG 720 consensus_1571#1 ------------------------------------------------------------ consensus_1571#0 TTGTGCTTCCAGCACTTTCTTTGAGGATTCAGGTGTTTCTGTGTGTGTAGGTATGACCAT 780 consensus_1571#1 -----------------------------------------------------TGACCAT 125 ******* consensus_1571#0 GTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGG 840 consensus_1571#1 GTGAAATTATCATCCAGAGGAGGAGGAGCCTTTGATATGGCAGGTGTGGGAGGAGCCAGG 185 ************************************************************ consensus_1571#0 GATGGCGCCTCCACCAGAGGTGCGGCAAAGAAGACGTTTGTCCATCAAGAAAGAGAGAAC 900 consensus_1571#1 GATGGCGCCTCCACCAGAGTGGCGG-AAAGAAGACGTTTGTGCATCAAGAAAGAGAGAAC 244 ******************* **** *************** ****************** consensus_1571#0 ATGTTCAGAGCTCCAGCAGAAAGCTTTGGAGCAGACGTCATGGCTCCAGCCCCTCACACA 960 consensus_1571#1 ATGTGCAGAGCTGCAGCAGAAAGCTTTGGGGCGGACGTCATGGCTCCA------------ 292 **** ******* **************** ** *************** consensus_1571#0 TACGTGGATGCCATCAGGACGGGTCTAAGTTCTTCATCACAAGATCACAGTCAGATTGAG 1020 consensus_1571#1 ------------------------------------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |