These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1584#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 386 fasta sequence [CTAGCTGGCGGGGCACCGGTGCCGCTGAAAGGGAACCTCGGAGTTGAAGGATGGCTGAACTTGATCACCGCGAAGGGGAGCAGGACATCGAGAAGAAAATTGTGGAGACGAGACAGAGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGGTTGGTGTTAATGATCTCACCCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGGTTCCTCCATGGCTACGACAAAGAAGGGAACAAACTAT] [+] EMBL FR0060285 [CTAGCTGGCGGGGCACCGGTGCCGCTGAAAGGGAACCTCGGAGTTGAAGGATGGCTGAACTTGATCACCGCGAAGGAGAGCAGGACATCGAGAAGAAAATTGTGGAGACGAGACAGAGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGATCTCACCCGAGAGTGTAATTCCCAG ] [+] EMBL FR0059452 [ GGGAGCAGGACATCGAGAAGAAAATTGTGCCCACGAGACAGAGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGGTTGGTGTTAATGATCTCA CCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGGTTCCTCCATGGCTACGACAAAGAAGGGAACAAACTAT] consensusID : consensus_1584#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 328 fasta sequence [GGGGTGTGGTTTTTAATTGTGGAGACGAGCACCCCGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGATCTCACCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGTTCCTCCATGGTTACGACAAAGAAGGAACAAACTATTCTGGTTCAAAGTGAAGCTACATGTCA] [+] EMBL FR0059466 [GGGGTGTGGTTTTTAATTGTGGAGACGAGCACCCCGATTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGGCTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGATGATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGATCTCACCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGTTCCTCCATGGTTACGACAAAGAAGGAACAAACTATTCTGGTTCAAAGTGAAGCTACATGTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1584#0 CTAGCTGGCGGGGCACCGGTGCCGCTGAAAGGGAACCTCGGAGTTGAAGGATGGCTGAAC 60 consensus_1584#1 ------------------------------------------------------------ consensus_1584#0 TTGATCACCGCGAAGGGGAGCAGGACATCGAGAAGAAAATTGTGGAGACGAG-ACAGAGA 119 consensus_1584#1 -----------------------GGGGTGTGGTTTTTAATTGTGGAGACGAGCACCCCGA 37 * * * *************** ** ** consensus_1584#0 TTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGG 179 consensus_1584#1 TTTACAAATGAGTTTCTCCAAGATTCAACAGAAAAATACGATTCCAGAGACGTGGAAAGG 97 ************************************************************ consensus_1584#0 CTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGAT 239 consensus_1584#1 CTCCAGAGTGAAGATGCTCTGGTGGAAGGCTACCTGACATGGAGGCTTTATGTTGTAGAT 157 ************************************************************ consensus_1584#0 GATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGGTTGGTGTTAATGAT 299 consensus_1584#1 GATGCCCTGAAAATGATTGATGAAAGCCTTCAATGGAGGAAAGAGTTTGGTGTTAATGAT 217 ********************************************* ************** consensus_1584#0 CTCACCCGAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTGGTTCCTCCATG 359 consensus_1584#1 CTCACC-GAGAGTGTAATTCCCAGATGGATGTTCGAGACCGGGGCCGTG-TTCCTCCATG 275 ****** ****************************************** ********** consensus_1584#0 GCTACGACAAAGAAGGGAACAAACTAT--------------------------- 386 consensus_1584#1 GTTACGACAAAGAAGG-AACAAACTATTCTGGTTCAAAGTGAAGCTACATGTCA 328 * ************** ********** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |