These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1587#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [ATGCCCCAGCCTTTAATATCTTTCATGTGTTTAAGCAACAGTGAATATGTGCCTTAACAAAAAAAAAAAATCTTAGGCAGCATGTTCATGAAACAATGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAAAAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAAACGTTTTTTGCGATAGATTTAATCCGATAGTAAAATGGAAAAGACAAACAGGAACGTCGTGTTGCTTTTACATCAACAATGTAAAATCAAACACGGGAAACGAACAAAGGCCTAAACTGCAGCAGCGTGCTGTGAGGTATGGAAAAAACATGAACCCTACATGTTAAATAAATATTAACATTAAATTCCGCTGGGGTTAGTTGGCACCCTCGGTGTTCAGCC] [+] EMBL CA331746 [ATGCCCCAGCCTTTAATATCTTTCATGTGTTTAAGCAACAGTGAATATGTGCCTTAACAAAAAAAAAAAATCTTAGGCAGCATGTTCATGAAACAATGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAAAAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAAACGTTTTTTGCGATAGATTTAATCCGATAGTAAAATGGAAAAGACAAACAGGAACGTCGTGTTGCTTTTACATCAACAATGTAAAATCAAACACGGGAAACGAACAAAGGCCTAAACTGCAGCAGCGTGCTGTGAGGTATGGAAAAAACATGAACCCTACATGTTAAATAAATATTAACATTAAATTCCGCTGGGGTTAGTTGGCACCCTCGGTGTTCAGCC] consensusID : consensus_1587#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 361 fasta sequence [CAAAACTTGGGTCCCGGGCCCCCCCCCAAGTTTTTTTTTTTTTTTTTTTTCATGAAACAATGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAAAAAGAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAAACGTAGTTTGCGATAGATTTCTCGTGCCGAATTCGGCACGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA] [-] EMBL FR0057911 [CAAAACTTGGGTCCCGGGCCCCCCCCCAAGTTTTTTTTTTTTTTTTTTTTCATGAAACAATGACACCTCTTTATTTTGAAACATTTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTCCCTCATGTTCCCCACAGAAGAAAAAAGAAAAGGA ] [+] EMBL FR0057665 [ CTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCACGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAAAAAGAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTGTAAACGTAGTTTGCGATAGATTTCTCGTGCCGAATTCGGCACGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1587#0 ATGCCCCAGCCTTTAATATCTTTCATGTGTTTAAGCAACAGTGAATATGTGCCTTAACAA 60 consensus_1587#1 ---------------------------------CAAAACTTGGGTCCCGGGCCCCCCCCC 27 *** * * *** * consensus_1587#0 AAAAAAAAAATCTTAGGCAGCATGTTCATGAAACAATGACACCTCTTTATTTTGAAACAT 120 consensus_1587#1 AAGTTT---TTTTTTTTTTTTTTTTTCATGAAACAATGACACCTCTTTATTTTGAAACAT 84 ** * ** * ************************************ consensus_1587#0 TTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCA 180 consensus_1587#1 TTCAGTGTGAGCTCTTTATTTTCTGACACACGTTCACATTCTTGGAATGTAACACCACCA 144 ************************************************************ consensus_1587#0 CGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAA 240 consensus_1587#1 CGACAGAAATGGGCCTTTATTTACAGCCACAGTTGTACCTCATGTTCCCCACAGAAGAAA 204 ************************************************************ consensus_1587#0 AAA---AAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTG 297 consensus_1587#1 AAAGAAAAGGACAGGAAGTACTGAGAAGAGTGATTTGGCTGATGCATCAGTTCCTTCTTG 264 *** ****************************************************** consensus_1587#0 TAAACGTTTTTTGCGATAGATTTAATCCGATAGTAAAATGGAAAAGACAAACAGGAACGT 357 consensus_1587#1 TAAACGTAGTTTGCGATAGATTT---CTCGTGCCGAATTCGGCACGAGGAGAGAGAGAG- 320 ******* ************** * * ** * * * ** * ** * consensus_1587#0 CGTGTTGCTTTTACATCAACAATGTAAAATCAAACACGGGAAACGAACAAAGGCCTAAAC 417 consensus_1587#1 ------------AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA------- 361 * * * * * * * * * ** * * * ** consensus_1587#0 TGCAGCAGCGTGCTGTGAGGTATGGAAAAAACATGAACCCTACATGTTAAATAAATATTA 477 consensus_1587#1 ------------------------------------------------------------ consensus_1587#0 ACATTAAATTCCGCTGGGGTTAGTTGGCACCCTCGGTGTTCAGCC 522 consensus_1587#1 --------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |