These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1607#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 725 fasta sequence [GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAAATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTAAACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCAAACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTTAACAGTTTCTCTGACATCTAAAGGTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCCATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTCACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAGACGGAGAGCG] [+] EMBL CA588662 [GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAAATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTAAACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCAAACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTTAACAGTTTCTCTGACATCTAAAGGTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCCATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTCACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAGACGGAGAGCG] consensusID : consensus_1607#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 451 fasta sequence [CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCCAACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT] [+] EMBL CA332892 [CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCCAACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAAACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGCACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT] [+] EMBL FR0058421 [ GCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCTGCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCACACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACGGAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCTGGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTATGGGGCGGAAACGGAGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1607#0 GTCTATAAGGAACTGCTTGTGTGGCACAACAAGATGGCCTGTTACTTCACGGCAGTCGAA 60 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 ATTCCACGTCGCGAACTGGTTTAAAGTGAGCATCCGATCGCTCGGTTCGGTCCCAGTTTA 120 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 AACGTTTCCACTTCAGTGTTTATGGAGGGACGCTGAAACTTTTGAGGCCAACAAGATTCA 180 consensus_1607#1 ------------------CACACCGAGAGGAAAGGACACCCAGCGGGCTGACGAACCCCC 42 * *** * ** ** *** ** * * consensus_1607#0 AACTTAGCTGTTGGGAAGACTTGTGGATTGTTTCCAGACAGATTTGGCCTT--AACAGTT 238 consensus_1607#1 AACACAGCCTACAAAGCCGCTCTGCAGCGAGCCCGAGACCGTCCTGTTTCTCCGCCATCT 102 *** *** ** * **** * ** * ** * consensus_1607#0 TCTCTGACATCTAAAG---GTTGCGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCA 295 consensus_1607#1 GCCATTTTATTAAAGGAGCGTAACGGTCTGATCACCGGCAAGAACAGCGGCGCGCTGCCA 162 * * ** ** * ** ************************************* consensus_1607#0 CACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGTTTGAAAACG 355 consensus_1607#1 CACAAAGCCCGCTTTGTCGCCCCCGATTCCCCCCTTGTGTCTTCATCCGGCAGGAAAACG 222 ************************************************** ******* consensus_1607#0 GAGGTCGTGGGGCTGGAGTGTGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCT 415 consensus_1607#1 GAGGTCGTGGGGCTGGAGTGCGTTCTCATGGCCGAGTCAGAGACTGAATGTGACACACCT 282 ******************** *************************************** consensus_1607#0 GGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTAT 475 consensus_1607#1 GGCCTTGACACGCTTGGGTCGGAGTGTGTCATAGCCCACAGCCACGTCGACCTTCACTAT 342 ************************************************************ consensus_1607#0 GGGGCGGAAACGGAGATCATGACGGAGGAGAGGCGCGGATTAGAGCTGGAAATCCACGGC 535 consensus_1607#1 GGGGCGGAAACGGAGATCATGACGGAGGAGAAGCGCGGATTAGAGCTGGAAATCCACGGC 402 ******************************* **************************** consensus_1607#0 ACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCTGCGTGGACGCC 595 consensus_1607#1 ACCGACTTAAAGATCCAGGGACTCGGCGGCGACCTCGGGACGGTGACCT----------- 451 ************************************************* consensus_1607#0 ATCGTGGCGGAGAGCGACCACGACTACATCAAGGTGGAGCACGGCGACATGCAGTGCTTC 655 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 ACCGGGGCGGAGATCAAGACGGCGACGGGCGAGACGCTGCTCGGGGAGGTGCTGCTCAAG 715 consensus_1607#1 ------------------------------------------------------------ consensus_1607#0 ACGGAGAGCG 725 consensus_1607#1 ---------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |