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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1609#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 707 fasta sequence
[GAGAGCCAGTTCAGCAGCTTTTCCTCACTCCTTCCAAGCAGATTCATTTCAGATGGAAAAGGGACACCCACCACAGGACTTGGCTCCTCCGTACCCAGGACCCCCTATGAATTATGGGAGCGCACCAGGAATGTATCCACAGCCTGGAATAAACCCTCAGCCTGGCCCCGCTCCACCTCCTCCTGGATACCAGGGAGGTGTTCCTTATTGTCCACCCCAGACTGCCGTACATGCAACTACAGTGACACATGTAGTAGTGTCTCCTGCGCTCCATGACGTTCCAGGGCAAACTTTGTGCCCCCACTGCCAGCAAACAGTGAGAGCCAGGAACGAACCGACAGCAGGTCTGATGACCTGGCTCGTGTGTGCTGCACTTGGATTTTTTGGGTGTTTCCTGTGCTGTTTTATCCCGTTCTGTATTGAATCCTGCCAAGACATAATGCATCGCTGTCCATCCTGCAACAGGGTCATTTACATCTACAAGCGAATGTCCTGAATGTCCTGAATGTCCTGCTCTGACAGGGACAACAATGATGACTCCTTTTTATCTGTGCCTTATTTTGAGTCTTTTTACTTTTACTACCACACATTCATATTTTGTTATGGAACAGTTTTAAGTTTATTTCCTTTTTTTACAGAACAAGGAAAATGCTAATATTCTCACTGTGCTGAATGGTTGTGGAGACTTTCACTCAGGTTCAGAGACT]
[+] EMBL CA845077 [GAGAGCCAGTTCAGCAGCTTTTCCTCACTCCTTCCAAGCAGATTCATTTCAGATGGAAAAGGGACACCCACCACAGGACTTGGCTCCTCCGTACCCAGGACCCCCTATGAATTATGGGAGCGCACCAGGAATGTATCCACAGCCTGGAATAAACCCTCAGCCTGGCCCCGCTCCACCTCCTCCTGGATACCAGGGAGGTGTTCCTTATTGTCCACCCCAGACTGCCGTACATGCAACTACAGTGACACATGTAGTAGTGTCTCCTGCGCTCCATGACGTTCCAGGGCAAACTTTGTGCCCCCACTGCCAGCAAACAGTGATCACCAGGACCGAACCGACAGCAGGTCTGATGACCTGGCTCGTGTGTGCTGCACTTGGATTTTTTGGGTGTTTCCTGTGCTGTTTTATCCCGTTCTGTATTGAATCCTGCCAAGACATAATGCATCGCTGTCCATCCTGCAACAGGGTCATTTACATCTACAAGCGAATGTCCTGAATGTCCTGAATGTCCTGCTCTGACAGGGACAACAATGATGACTCCTTTTTATCTGTGCCTTATTTTGATTCTTTTTACTTTTACTACCACACATTCATATTTTGTTATGGAACAGTTTTAATT ]
[+] EMBL FR0057050 [ cGAGTCTAGTACGAACCGACAGCAGGTCTGATGACCTGGCTCGTGTGTGCTGCACTTGGATTTTTTGGGTGTTTCCTGTGCTGTTTTATCCCGTTCTGTATTGAATCCTGCCAAGACATAATGCATCGCTGTCCATCCTGCAACAGGGTCATTTACATCTACAAGCGAATGTCCTGAATGTCCTGAATGTCCTGCTCTGACAGGGACAACAATGATGACTCCTTTTTATCTGTGCCTTATTTTGAGTCTTTTTACTTTTACTACCACACATTCATATTTTGTTATGGAACAGTTTTAAGTTTATTTCCTTTTTTTACAGAACAAGGAAAATGCTAATATTCTCACTGTGCTGAATGGTTGTGGAGACTTTCACTCAGGTTCAGAGACT]
consensusID : consensus_1609#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence
[TCCTGACTCAGACAAGGGAGAGCCAGTTCAGCAGCTTTTCCTCACTCCTTCCAAGCAGATTCATTTCAGATGGAAAAGGGACACCCACCACAGGACTTGGCTCCTCCGTACCCAGGACCCCCTATGAATTATGGGAGCGCACCAGGAATGTATCCACAGCCTGGAATAAACCCTCAGCCTGGCCCCGCTCCACCTCCTCCTGGATACCAGGGAGGTCTGTGTCGCCATACAGCCATCATACAGTGTCCAGATGCACTGAATGACACAGAAACATTAGAGTCAACAAAAACAACACTTCTCTTCCATAGACTATACCTAGAAAAATCTATTATACAAATAAAAATATACTCAGATGCATCCTTGATGTCCTGAGGTACACCTAATTCATTTGTCCCAGCTTTAAAACTGCATGTGTTACATCCTGCAGGTGTTCCTTATTGTCCACCCCAGACTGCCGTACATGCAACTACAGGTAAGACCAAGCATGGACCCCAGCAGAGACAAGACACTGACAGACTGAGGCA]
[+] EMBL CA589974 [TCCTGACTCAGACAAGGGAGAGCCAGTTCAGCAGCTTTTCCTCACTCCTTCCAAGCAGATTCATTTCAGATGGAAAAGGGACACCCACCACAGGACTTGGCTCCTCCGTACCCAGGACCCCCTATGAATTATGGGAGCGCACCAGGAATGTATCCACAGCCTGGAATAAACCCTCAGCCTGGCCCCGCTCCACCTCCTCCTGGATACCAGGGAGGTCTGTGTCGCCATACAGCCATCATACAGTGTCCAGATGCACTGAATGACACAGAAACATTAGAGTCAACAAAAACAACACTTCTCTTCCATAGACTATACCTAGAAAAATCTATTATACAAATAAAAATATACTCAGATGCATCCTTGATGTCCTGAGGTACACCTAATTCATTTGTCCCAGCTTTAAAACTGCATGTGTTACATCCTGCAGGTGTTCCTTATTGTCCACCCCAGACTGCCGTACATGCAACTACAGGTAAGACCAAGCATGGACCCCAGCAGAGACAAGACACTGACAGACTGAGGCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1609#0 -----------------GAGAGCCAGTTCAGCAGCTTTTCCTCACTCCTTCCAAGCAGAT 43
consensus_1609#1 TCCTGACTCAGACAAGGGAGAGCCAGTTCAGCAGCTTTTCCTCACTCCTTCCAAGCAGAT 60
*******************************************
consensus_1609#0 TCATTTCAGATGGAAAAGGGACACCCACCACAGGACTTGGCTCCTCCGTACCCAGGACCC 103
consensus_1609#1 TCATTTCAGATGGAAAAGGGACACCCACCACAGGACTTGGCTCCTCCGTACCCAGGACCC 120
************************************************************
consensus_1609#0 CCTATGAATTATGGGAGCGCACCAGGAATGTATCCACAGCCTGGAATAAACCCTCAGCCT 163
consensus_1609#1 CCTATGAATTATGGGAGCGCACCAGGAATGTATCCACAGCCTGGAATAAACCCTCAGCCT 180
************************************************************
consensus_1609#0 GGCCCCGCTCCACCTCCTCCTGGATACCAGGGAGGTGTTCCTTATTGTCCACCCCAGACT 223
consensus_1609#1 GGCCCCGCTCCACCTCCTCCTGGATACCAGGGAGGTCTGTGTCGCCATACAGCC---ATC 237
************************************ * * * ** ** *
consensus_1609#0 GCCGTACATGCAACTACAGTGACACATGTAGTAGTGTCTCCTGCGCTCCATGACGTTCCA 283
consensus_1609#1 ATACAGTGTCCAGATGCACTGAATGACACAGAAACAT----TAGAGTCAA--------CA 285
* ** * ** *** * ** * * * ** * **
consensus_1609#0 GGGCAAACTTTGTGCCCCCACTGCCAGCAAACAGTGAGAGCCAGGA-ACGAACCGACAGC 342
consensus_1609#1 AAAACAACACTTCTCTTCCATAGACTATACCTAGAAAAATCTATTATACAAATAAAAATA 345
*** * * *** * * * ** * * * * * ** ** * *
consensus_1609#0 AGGTCTGATGA--CCTGGCTCGTGTGTGCTGCACTTGGATTTTTTGGGTGTTTCCTGTGC 400
consensus_1609#1 TACTCAGATGCATCCTTGATGTCCTGAGGTACACCTAATTCATTTG------TCCCA--- 396
** **** *** * * ** * * *** * * **** ***
consensus_1609#0 TGTTTTATCCCGTTCTGTATTGAATCCTGCCAAGACATAATGCATCGCTGTCCATCCTGC 460
consensus_1609#1 -GCTTTAAAACTGCATGTGTTACATCCTGC--AGGTGT---TCCTTATTGTCCACCCCA- 449
* **** * *** ** ******* ** * * * ****** **
consensus_1609#0 AACAGGGTCATTTACATCTACAAGCGAATGTCCTGAATGTCCTGAATGTCCTGCTCTGAC 520
consensus_1609#1 GACTGCCGTACATGCAACTACAGGT-AAGACCAAGCATGGACCCCA-GCAGAGACAAGAC 507
** * * * ** ***** * ** * * *** * * * * ***
consensus_1609#0 AGGGACAACAATGATGACTCCTTTTTATCTGTGCCTTATTTTGAGTCTTTTTACTTTTAC 580
consensus_1609#1 ACTGACAG-ACTGAGGCA------------------------------------------ 524
* **** * *** *
consensus_1609#0 TACCACACATTCATATTTTGTTATGGAACAGTTTTAAGTTTATTTCCTTTTTTTACAGAA 640
consensus_1609#1 ------------------------------------------------------------
consensus_1609#0 CAAGGAAAATGCTAATATTCTCACTGTGCTGAATGGTTGTGGAGACTTTCACTCAGGTTC 700
consensus_1609#1 ------------------------------------------------------------
consensus_1609#0 AGAGACT 707
consensus_1609#1 -------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |