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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence
[AATGCATTAATTTGATGCTCTTAACAGCAGTAAGAGACTTTAAAACACAGGAACTAGTTCTACAGAAGACAAGAATGGGAAAATCTAGGAAAAGGAATCACATCTTTTATGTTGGCAACTCCAAGAATGCACTGCAAATATCGCTCGAATCCCAATCCAAAGCCACCGTGAGGAATGGAGCCAAAACGCCTCAAATCCAAATACCAGCTGTAGGCATCCTCCAATCCGACCTCTTCCAGACGTGTTCTGAGCAGATCTAATCTCTCCTCTCTCAGTGAGCCCCCACAAAGCTCTCCGACTCCTGGCACAAGAAGGTCGACTGCAGCTGCTGTATGCTCCGGATGATCCTGATTGTCCCTTGCATAAAAAGGCTTAAGGTCATAAGGGTAATCAGTGACAAAGACCGGAATATTTCCACAATGTTTCACCAGATACTTTTCATGTTCTTTCTGAAGGCCACAACCCCACTCTGTTGGAAAGACAAAATTCTGAGAGCTGCGGTTTAGGATGTCTACAGCCTCACTGTAGGTCATTACAGGAAATTTCGTCCTCAGCCAGTAATCTATGGAGTCCCTGTGTCCAGGACTCACATGCTTGTGAAA]
[+] EMBL CA329482 [AATGCATTAATTTGATGCTCTTAACAGCAGTAAGAGACTTTAAAACACAGGAACTAGTTCTACAGAAGACAAGAATGGGAAAATCTAGGAAAAGGAATCACATCTTTTATGTTGGCAACTCCAAGAATGCACTGCAAATATCGCTCGAATCCCAATCCAAAGCCACCGTGAGGAATGGAGCCAAAACGCCTCAAATCCAAATACCAGCTGTAGGCATCCTCCAATCCGACCTCTTCCAGACGTGTTCTGAGCAGATCTAATCTCTCCTCTCTCAGTGAGCCCCCACAAAGCTCTCCGACTCCTGGCACAAGAAGGTCGACTGCAGCTGCTGTATGCTCCGGATGATCCTGATTGTCCCTTGCATAAAAAGGCTTAAGGTCATAAGGGTAATCAGTGACAAAGACCGGAATATTTCCACAATGTTTCACCAGATACTTTTCATGTTCTTTCTGAAGGCCACAACCCCACTCTGTTGGAAAGACAAAATTCTGAGAGCTGCGGTTTAGGATGTCTACAGCCTCACTGTAGGTCATTACAGGAAATTTCGTCCTCAGCCAGTAATCTATGGAGTCCCTGTGTCCAGGACTCACATGCTTGTGAAA]
consensusID : consensus_163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 590 fasta sequence
[ATTCATTTATTTGATGCTCTTACCCGCATTAAGAGACTTTAAAACACAGCAACTAGTTCTACAGAAGACAAGAATGGGAAAATCTAGGAAAAGGAATCACATCTTTTATGTTGTCAACTCCAAGAATGCACTGCAAATATCGCTCGAATCCCAATCCAAAGCCACCGTGAGGAATGGAGCCAAAACGCCTCAAATCCAAATACCAGCTGTAGGCATCCTCCAATCCGACCTCTTCCAGACGTGTTCTGAGCAGATCTAATCTCTCCTCTCTCAGTGAGCCCCCACAAAGCTCTCCGACTCCTGGCACAAGAAGGTCGACTGCAGCTGCCTGCACACAAGTGACAGTTGGAGGCGACTCTCGTATGCAAATCACTGATATCACAAGAAGCAGCTACGGATGTTAAATGATTGATTTCCCCAGCAAACATGAAAATGTCACAGTGTCTTACTGTATGCTCCGGATGATCCTGATTGTCCCTTGCATAAAAAGGCTTAAGGTCATAAGGGTAATCAGTGACAAAGACCGGAATATTTCCACAATGTTTCACCAGATACTTTTCATGGTCTTTCTGAAGGTCACAACCCCACTC]
[+] EMBL CA331499 [ATTCATTTATTTGATGCTCTTACCCGCATTAAGAGACTTTAAAACACAGCAACTAGTTCTACAGAAGACAAGAATGGGAAAATCTAGGAAAAGGAATCACATCTTTTATGTTGTCAACTCCAAGAATGCACTGCAAATATCGCTCGAATCCCAATCCAAAGCCACCGTGAGGAATGGAGCCAAAACGCCTCAAATCCAAATACCAGCTGTAGGCATCCTCCAATCCGACCTCTTCCAGACGTGTTCTGAGCAGATCTAATCTCTCCTCTCTCAGTGAGCCCCCACAAAGCTCTCCGACTCCTGGCACAAGAAGGTCGACTGCAGCTGCCTGCACACAAGTGACAGTTGGAGGCGACTCTCGTATGCAAATCACTGATATCACAAGAAGCAGCTACGGATGTTAAATGATTGATTTCCCCAGCAAACATGAAAATGTCACAGTGTCTTACTGTATGCTCCGGATGATCCTGATTGTCCCTTGCATAAAAAGGCTTAAGGTCATAAGGGTAATCAGTGACAAAGACCGGAATATTTCCACAATGTTTCACCAGATACTTTTCATGGTCTTTCTGAAGGTCACAACCCCACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_163#0 AATGCATTAATTTGATGCTCTTAACAGCAGTAAGAGACTTTAAAACACAGGAACTAGTTC 60
consensus_163#1 -ATTCATTTATTTGATGCTCTTACCCGCATTAAGAGACTTTAAAACACAGCAACTAGTTC 59
** **** ************** * *** ******************** *********
consensus_163#0 TACAGAAGACAAGAATGGGAAAATCTAGGAAAAGGAATCACATCTTTTATGTTGGCAACT 120
consensus_163#1 TACAGAAGACAAGAATGGGAAAATCTAGGAAAAGGAATCACATCTTTTATGTTGTCAACT 119
****************************************************** *****
consensus_163#0 CCAAGAATGCACTGCAAATATCGCTCGAATCCCAATCCAAAGCCACCGTGAGGAATGGAG 180
consensus_163#1 CCAAGAATGCACTGCAAATATCGCTCGAATCCCAATCCAAAGCCACCGTGAGGAATGGAG 179
************************************************************
consensus_163#0 CCAAAACGCCTCAAATCCAAATACCAGCTGTAGGCATCCTCCAATCCGACCTCTTCCAGA 240
consensus_163#1 CCAAAACGCCTCAAATCCAAATACCAGCTGTAGGCATCCTCCAATCCGACCTCTTCCAGA 239
************************************************************
consensus_163#0 CGTGTTCTGAGCAGATCTAATCTCTCCTCTCTCAGTGAGCCCCCACAAAGCTCTCCGACT 300
consensus_163#1 CGTGTTCTGAGCAGATCTAATCTCTCCTCTCTCAGTGAGCCCCCACAAAGCTCTCCGACT 299
************************************************************
consensus_163#0 CCTGGCACAAGAAGGTCGACTGCAGCTGC-TGTATGCTCCGGATGATCCTGATTGTCCCT 359
consensus_163#1 CCTGGCACAAGAAGGTCGACTGCAGCTGCCTGCACACAAGTGACAGTTGGAGGCGACTCT 359
***************************** ** * * ** * * * **
consensus_163#0 TGCATAAAAAGGCTTAAGGTCATAAGG-GTAATCAGTGACAAAGACCGGAATATTTCCAC 418
consensus_163#1 CGTATGCAAATCACTGATATCACAAGAAGCAGCTACGGATGTTAAATGATTGATTTCCCC 419
* ** *** * * *** *** * * * ** * * ****** *
consensus_163#0 AATGTTTCACCAGATACTTTTCATGTTCTTTCTGAAGGCC----ACAACCCCACTCTGTT 474
consensus_163#1 AGCAAA-CATGAAA-ATGTCACAGTGTCTTACTGTATGCTCCGGATGATCCTGATTGTCC 477
* ** * * * * ** **** *** * ** * * ** *
consensus_163#0 GGAAAGACAAAATTCTGAGAGCTGCGGTTTAGGATGTCTACAGCCTCACTGTAGGTCATT 534
consensus_163#1 CTTGCATAAAAAGGCTTAAGGTCA----TAAGGGTAATCAGTGACAAAGACCGGAATATT 533
**** ** * * * *** * * * * * * ***
consensus_163#0 ACAGGAAATTTCGTCCTCAGCCAGTAATCTATGGAGTCCCTGTGTCCAGGACTCACATGC 594
consensus_163#1 TCCACAATGTT--TCACCAGATACTT-TTCATGGTCTTTCTGAAGGTCACAACCCCACTC 590
* ** ** ** *** * * * **** * *** * * ** *
consensus_163#0 TTGTGAAA 602
consensus_163#1 --------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |