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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1634#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence
[AGCGTTTTTATTACACTTCTTTTATTTTTTACAAAACGATGACATGATGTCCCACAACAAGGTGTTTTCCCGCGTCCCTTTGGGCTGCTGTATTAATTTGCATTGCACAAACGCTCCGATCAGTCCGTTCAGTCCGCTCAGATAGTTGCCCATCTTAAGCAAGTGGATGTGCAGAGAGAAATCAGCATTTGGTATTAAAAACACAACACAGAAAGAAGGGCAGAGATTTTGATTTTTTTTCGTTTGTTCTCTCTTTTTTGGTGTTAATTTATCATGAGTCTATCTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCCTGCTCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGGCTGTTGCCCTCGGACCTCAGCTCCACGTTCTTGGAGCCCTGGAACACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACCCTGGTCTTGGCAGGGAAGGTGATTGCCTT]
[+] EMBL CA331152 [AGCGTTTTTATTACACTTCTTTTATTTTTTACAAAACGATGACATGATGTCCCACAACAAGGTGTTTTCCCGCGTCCCTTTGGGCTGCTGTATTAATTTGCATTGCACAAACGCTCCGATCAGTCCGTTCAGTCCGCTCAGATAGTTGCCCATCTTAAGCAAGTGGATGTGCAGAGAGAAATCAGCATTTGGTATTAAAAACACAACACAGAAAGAAGGGCAGAGATTTTGATTTTTTTTCGTTTGTTCTCTCTTTTTTGGTGTTAATTTATCATGAGTCTATCTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCCTGCTCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGGCTGTTGCCCTCGGACCTCAGCTCCACGTTCTTGGAGCCCTGGAACACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACCCTGGTCTTGGCAGGGAAGGTGATTGCCTT]
consensusID : consensus_1634#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 386 fasta sequence
[AAAAATGGGGACCGGGGCCCCCCCCGGGGAAATGGCCTGGACCCGTGGTGTTAACATACCATGAGTCTATGTATTTGAAACAGACTGGACCAATGTCCAAGCCAAACTCCTGCTCAGCTCCACCAATGCCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGCCTGTTGCCCTCGGCCCTCAGCTCCACGTCGTTGGAGCCCTGGAGCACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGCTGGCCTGG]
[-] EMBL FR0055515 [AAAAATGGGGTCCCGGGCCCCCCCCGGGCAAATGGCCTTGACCTGTGGTGTTAACATACCATGAGTCTATGTATTTGAAACAGACTGGACCAATGTCCAAGCCAAACTCCTGCTCAGCTCCACCAATGCCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGCCTGTTGCCCTCGGCCCTCAGCTCCACGTCGTTGGAGCCCTGGAGCACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGTTGGCCTG ]
[-] EMBL FR0055489 [ GGACCGGGGCCCCCCCCGAGGAATTTGCCTGCCCCCTTGGTGTTAATTTACCATGAGTCTATCTATTTGAAACAGACTGGCCCAATGTCCAAGCCAAACTCCTGCTCAGCTCCACCAATGCCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGCCTGTTGCCCTCGGCCCTCAGCTCCACGTCGTTGGAGCCCTGGAGCACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGCTGGCCTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1634#0 AGCGTTTTTATTACACTTCTTTTATTTTTTACAAAACGATGACATGATGTCCCACAACAA 60
consensus_1634#1 ------------------------------------------------------------
consensus_1634#0 GGTGTTTTCCCGCGTCCCTTTGGGCTGCTGTATTAATTTGCATTGCACAAACGCTCCGAT 120
consensus_1634#1 ------------------------------------------------------------
consensus_1634#0 CAGTCCGTTCAGTCCGCTCAGATAGTTGCCCATCTTAAGCAAGTGGATGTGCAGAGAGAA 180
consensus_1634#1 ------------------------------------------------------------
consensus_1634#0 ATCAGCATTTGGTATTAAAAACACAACACAGAAAGAAGGGCAGAGATTTTGATTTTTTTT 240
consensus_1634#1 -----------------------------------AAAAATGGGGACCGGGGCCCCCCCC 25
** * ** *
consensus_1634#0 CGTTTGTTCTCTCT--TTTTTGGTGTTAATTTATCATGAGTCTATCTATTTGAAACAGAC 298
consensus_1634#1 GGGGAAATGGCCTGGACCCGTGGTGTTAACATACCATGAGTCTATGTATTTGAAACAGAC 85
* * * ********* ** *********** **************
consensus_1634#0 TGGGCCAATGTCCAAACCAAACTCCTGCTCAGCTCCACCAATGTCCAAAGGTGCAATGTC 358
consensus_1634#1 TGGACCAATGTCCAAGCCAAACTCCTGCTCAGCTCCACCAATGCCCAAAGGTGCAATGTC 145
*** *********** *************************** ****************
consensus_1634#0 GAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTC 418
consensus_1634#1 GAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTC 205
************************************************************
consensus_1634#0 GCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGGCTGTTGCCCTC 478
consensus_1634#1 GCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGCCTGTTGCCCTC 265
************************************************ ***********
consensus_1634#0 GGACCTCAGCTCCACGTTCTTGGAGCCCTGGAACACCACTGCCTTCTTCATGTCGCCAGT 538
consensus_1634#1 GGCCCTCAGCTCCACGTCGTTGGAGCCCTGGAGCACCACTGCCTTCTTCATGTCGCCAGT 325
** ************** ************* ***************************
consensus_1634#0 CTCACCATCCATGTAAGCGACCCTGGTCTTGGCAGGGAAGGTGATTGCCTT--------- 589
consensus_1634#1 CTCACCATCCATGTAAGCGACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGCTGGCCTG 385
********************* *** ***** ** ******* **
consensus_1634#0 -
consensus_1634#1 G 386
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |