These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1634#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 589 fasta sequence [AGCGTTTTTATTACACTTCTTTTATTTTTTACAAAACGATGACATGATGTCCCACAACAAGGTGTTTTCCCGCGTCCCTTTGGGCTGCTGTATTAATTTGCATTGCACAAACGCTCCGATCAGTCCGTTCAGTCCGCTCAGATAGTTGCCCATCTTAAGCAAGTGGATGTGCAGAGAGAAATCAGCATTTGGTATTAAAAACACAACACAGAAAGAAGGGCAGAGATTTTGATTTTTTTTCGTTTGTTCTCTCTTTTTTGGTGTTAATTTATCATGAGTCTATCTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCCTGCTCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGGCTGTTGCCCTCGGACCTCAGCTCCACGTTCTTGGAGCCCTGGAACACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACCCTGGTCTTGGCAGGGAAGGTGATTGCCTT] [+] EMBL CA331152 [AGCGTTTTTATTACACTTCTTTTATTTTTTACAAAACGATGACATGATGTCCCACAACAAGGTGTTTTCCCGCGTCCCTTTGGGCTGCTGTATTAATTTGCATTGCACAAACGCTCCGATCAGTCCGTTCAGTCCGCTCAGATAGTTGCCCATCTTAAGCAAGTGGATGTGCAGAGAGAAATCAGCATTTGGTATTAAAAACACAACACAGAAAGAAGGGCAGAGATTTTGATTTTTTTTCGTTTGTTCTCTCTTTTTTGGTGTTAATTTATCATGAGTCTATCTATTTGAAACAGACTGGGCCAATGTCCAAACCAAACTCCTGCTCAGCTCCACCAATGTCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGGCTGTTGCCCTCGGACCTCAGCTCCACGTTCTTGGAGCCCTGGAACACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACCCTGGTCTTGGCAGGGAAGGTGATTGCCTT] consensusID : consensus_1634#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 386 fasta sequence [AAAAATGGGGACCGGGGCCCCCCCCGGGGAAATGGCCTGGACCCGTGGTGTTAACATACCATGAGTCTATGTATTTGAAACAGACTGGACCAATGTCCAAGCCAAACTCCTGCTCAGCTCCACCAATGCCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGCCTGTTGCCCTCGGCCCTCAGCTCCACGTCGTTGGAGCCCTGGAGCACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGCTGGCCTGG] [-] EMBL FR0055515 [AAAAATGGGGTCCCGGGCCCCCCCCGGGCAAATGGCCTTGACCTGTGGTGTTAACATACCATGAGTCTATGTATTTGAAACAGACTGGACCAATGTCCAAGCCAAACTCCTGCTCAGCTCCACCAATGCCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGCCTGTTGCCCTCGGCCCTCAGCTCCACGTCGTTGGAGCCCTGGAGCACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGTTGGCCTG ] [-] EMBL FR0055489 [ GGACCGGGGCCCCCCCCGAGGAATTTGCCTGCCCCCTTGGTGTTAATTTACCATGAGTCTATCTATTTGAAACAGACTGGCCCAATGTCCAAGCCAAACTCCTGCTCAGCTCCACCAATGCCCAAAGGTGCAATGTCGAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTCGCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGCCTGTTGCCCTCGGCCCTCAGCTCCACGTCGTTGGAGCCCTGGAGCACCACTGCCTTCTTCATGTCGCCAGTCTCACCATCCATGTAAGCGACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGCTGGCCTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1634#0 AGCGTTTTTATTACACTTCTTTTATTTTTTACAAAACGATGACATGATGTCCCACAACAA 60 consensus_1634#1 ------------------------------------------------------------ consensus_1634#0 GGTGTTTTCCCGCGTCCCTTTGGGCTGCTGTATTAATTTGCATTGCACAAACGCTCCGAT 120 consensus_1634#1 ------------------------------------------------------------ consensus_1634#0 CAGTCCGTTCAGTCCGCTCAGATAGTTGCCCATCTTAAGCAAGTGGATGTGCAGAGAGAA 180 consensus_1634#1 ------------------------------------------------------------ consensus_1634#0 ATCAGCATTTGGTATTAAAAACACAACACAGAAAGAAGGGCAGAGATTTTGATTTTTTTT 240 consensus_1634#1 -----------------------------------AAAAATGGGGACCGGGGCCCCCCCC 25 ** * ** * consensus_1634#0 CGTTTGTTCTCTCT--TTTTTGGTGTTAATTTATCATGAGTCTATCTATTTGAAACAGAC 298 consensus_1634#1 GGGGAAATGGCCTGGACCCGTGGTGTTAACATACCATGAGTCTATGTATTTGAAACAGAC 85 * * * ********* ** *********** ************** consensus_1634#0 TGGGCCAATGTCCAAACCAAACTCCTGCTCAGCTCCACCAATGTCCAAAGGTGCAATGTC 358 consensus_1634#1 TGGACCAATGTCCAAGCCAAACTCCTGCTCAGCTCCACCAATGCCCAAAGGTGCAATGTC 145 *** *********** *************************** **************** consensus_1634#0 GAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTC 418 consensus_1634#1 GAGGACGGGCAGGCGAGATGGTTTATTTGTTCTGTACTCGATCACTGTCTTGCTCCATTC 205 ************************************************************ consensus_1634#0 GCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGGCTGTTGCCCTC 478 consensus_1634#1 GCCAGTGTGTCTAGTGCAGCCATCCTCCAGCACGGAGAAGGTGAAGCGCCTGTTGCCCTC 265 ************************************************ *********** consensus_1634#0 GGACCTCAGCTCCACGTTCTTGGAGCCCTGGAACACCACTGCCTTCTTCATGTCGCCAGT 538 consensus_1634#1 GGCCCTCAGCTCCACGTCGTTGGAGCCCTGGAGCACCACTGCCTTCTTCATGTCGCCAGT 325 ** ************** ************* *************************** consensus_1634#0 CTCACCATCCATGTAAGCGACCCTGGTCTTGGCAGGGAAGGTGATTGCCTT--------- 589 consensus_1634#1 CTCACCATCCATGTAAGCGACGCTGTTCTTGCAGTGGTAGGTGATGTTCTGGCTGGCCTG 385 ********************* *** ***** ** ******* ** consensus_1634#0 - consensus_1634#1 G 386 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |