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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1649#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 668 fasta sequence
[CAGCAGAACCTGGATGTTTGCATAAAACTGCTGGACAAGGTCAGATCTGCTTCTCGGGTGGACTTCTGTTCCTCCATCTCTCTGAGCACAATTTAAACATGGGGGCAAATAACCTGAACCTTGCTGGGTTACCCCTCCCCGCCCGGCGCTGGAGCCCCTTCAACAGCATCAAGTTTTTCGTGTTGTGTCACAGTTTGCTGCAGCTGTCACAGCTTCTGGTGTCCGGCTACATGAAGAGCTCTATCTCCACCATTGAAAGGCGTTACGGCCTCTCCAGTCAGAAGTCGGGGGTGCTGGCTGCTTTTAATGAGGTGGGAAACACTGTCCTCATCGTCTTCGTGAGCTTCTTTGGGAGTCGAGTCCACCGACCACGGTTCATTGGAGGCGGAGCTCTGCTGGCCTGCCTCGCCTCCCTGCTGATGGCTGTGCCACATTTTCTGAGTGGGCCATATGAATACACCGACAGCATCAGTTCCTCCATCGACAACACCTCTACCGTCTGCCAATCAGAGAACAATCTCAACACCAAACCTGAGAATCAGAGCTGCAGCCAGCAGGACAACCCCACCCAGCACGTAGTCTACCCACTGCTGCTGCTGGGTCAGCTCCTGCTGGGAATTGGTGCTGTTCCCATCCAGCCTTTTGGCATCTCCTACATTGATGACCAT]
[+] EMBL CA591309 [CAGCAGAACCTGGATGTTTGCATAAAACTGCTGGACAAGGTCAGATCTGCTTCTCGGGTGGACTTCTGTTCCTCCATCTCTCTGAGCACAATTTAAACATGGGGGCAAATAACCTGAACCTTGCTGGGTTACCCCTCCCCGCCCGGCGCTGGAGCCCCTTCAACAGCATCAAGTTTTTCGTGTTGTGTCACAGTTTGCTGCAGCTGTCACAGCTTCTGGTGTCCGGCTACATGAAGAGCTCTATCTCCACCATTGAAAGGCGTTACGGCCTCTCCAGTCAGAAGTCGGGGGTGCTGGCTGCTTTTAATGAGGTGGGAAACACTGTCCTCATCGTCTTCGTGAGCTTCTTTGGGAGTCGAGTCCACCGACCACGGTTCATTGGAGGCGGAGCTCTGCTGGCCTGCCTCGCCTCCCTGCTGATGGCTGTGCCACATTTTCTGAGTGGGCCATATGAATACACCGACAGCATCAGTTCCTCCATCGACAACACCTCTACCGTCTGCCAATCAGAGAACAATCTCAACACCAAACCTGAGAATCAGAGCTGCAGCCAGCAGGACAACCCCACCCAGCACGTAGTCTACCCACTGCTGCTGCTGGGTCAGCTCCTGCTGGGAATTGGTGCTGTT ]
[+] EMBL CA590078 [ AAGGTCAGATCTGCTTCTCGGGTGGACTTCTGTTCCTCCATCTCTCTGAGCACAATTTAAACATGGGGGCAAATAACCTGAACCTTGCTGGGTTACCCCTCCCCGCCCGGCGCTGGAGCCCCTTCAACAGCATCAAGTTTTTCGTGTTGTGTCACAGTTTGCTGCAGCTGTCACAGCTTCTGGTGTCCGGCTACATGAAGAGCTCTATCTCCACCATTGAAAGGCGTTACGGCCTCTCCAGTCAGAAGTCGGGGGTGCTGGCTGCTTTTAATGAGGTGGGAAACACTGTCCTCATCGTCTTCGTGAGCTTCTTTGGGAGTCGAGTCCACCGACCACGGTTCATTGGAGGCGGAGCTCTGCTGGCCTGCCTCGCCTCCCTGCTGATGGCTGTGCCACATTTTCTGAGTGGGCCATATGAATACACCGACAGCATCAGTTCCTCCATCGACAACACCTCTACCGTCTGCCAATCAGAGAACAATCTCAACACCAAACCTGAGAATCAGAGCTGCAGCCAGCAGGACAACCCCACCCAGCACGTAGTCTACCCACTGCTGCTGCTGGGTCAGCTCCTGCTGGGAATTGGTGCTGTTCCCATCCAGCCTTTTGGCATCTCCTACATTGATGACCAT]
consensusID : consensus_1649#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[TACCGAGGTTCAAATTCCACCTCCTCCGTGCTGCGGGGATATCTTGATAACAGCACAACCTGTATGTTTGCATAAAACTGCTGAACAAGGTGGACTTCTGTTCCTCCATCTCTCTGAGCACAATTTAAACATGGGGGCAAATAACCTGAACCTTGCTGGGNTACCCCTCCCCGCCCGGCGCTGGAGCCCCTTCAACAGCATCAAGTTTTTCGTGTTGCGTCACAGTTTGCTGCAGCTGTCACAGCTTCTGGTGTCCGGCTACATGAAGAGCTCTATCTCCACCATTGAAAGGCGTTACGGCCTCTC]
[+] EMBL FR0060664 [TACCGAGGTTCAAATTCCACCTCCTCCGTGCTGCGGGGATATCTTGATAACAGCACAACCTGTATGTTTGCATAAAACTGCTGAACAAGGTGGACTTCTGTTCCTCCATCTCTCTGAGCACAATTTAAACATGGGGGCAAATAACCTGAACCTTGCTGGGNTACCCCTCCCCGCCCGGCGCTGGAGCCCCTTCAACAGCATCAAGTTTTTCGTGTTGCGTCACAGTTTGCTGCAGCTGTCACAGCTTCTGGTGTCCGGCTACATGAAGAGCTCTATCTCCACCATTGAAAGGCGTTACGGCCTCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1649#0 --------------------------------------------------CAGCAGAACC 10
consensus_1649#1 TACCGAGGTTCAAATTCCACCTCCTCCGTGCTGCGGGGATATCTTGATAACAGCACAACC 60
***** ****
consensus_1649#0 TGGATGTTTGCATAAAACTGCTGGACAAGGTCAGATCTGCTTCTCGGGTGGACTTCTGTT 70
consensus_1649#1 TGTATGTTTGCATAAAACTGCTGAACAAGGT------------------GGACTTCTGTT 102
** ******************** ******* ***********
consensus_1649#0 CCTCCATCTCTCTGAGCACAATTTAAACATGGGGGCAAATAACCTGAACCTTGCTGGGTT 130
consensus_1649#1 CCTCCATCTCTCTGAGCACAATTTAAACATGGGGGCAAATAACCTGAACCTTGCTGGGNT 162
********************************************************** *
consensus_1649#0 ACCCCTCCCCGCCCGGCGCTGGAGCCCCTTCAACAGCATCAAGTTTTTCGTGTTGTGTCA 190
consensus_1649#1 ACCCCTCCCCGCCCGGCGCTGGAGCCCCTTCAACAGCATCAAGTTTTTCGTGTTGCGTCA 222
******************************************************* ****
consensus_1649#0 CAGTTTGCTGCAGCTGTCACAGCTTCTGGTGTCCGGCTACATGAAGAGCTCTATCTCCAC 250
consensus_1649#1 CAGTTTGCTGCAGCTGTCACAGCTTCTGGTGTCCGGCTACATGAAGAGCTCTATCTCCAC 282
************************************************************
consensus_1649#0 CATTGAAAGGCGTTACGGCCTCTCCAGTCAGAAGTCGGGGGTGCTGGCTGCTTTTAATGA 310
consensus_1649#1 CATTGAAAGGCGTTACGGCCTCTC------------------------------------ 306
************************
consensus_1649#0 GGTGGGAAACACTGTCCTCATCGTCTTCGTGAGCTTCTTTGGGAGTCGAGTCCACCGACC 370
consensus_1649#1 ------------------------------------------------------------
consensus_1649#0 ACGGTTCATTGGAGGCGGAGCTCTGCTGGCCTGCCTCGCCTCCCTGCTGATGGCTGTGCC 430
consensus_1649#1 ------------------------------------------------------------
consensus_1649#0 ACATTTTCTGAGTGGGCCATATGAATACACCGACAGCATCAGTTCCTCCATCGACAACAC 490
consensus_1649#1 ------------------------------------------------------------
consensus_1649#0 CTCTACCGTCTGCCAATCAGAGAACAATCTCAACACCAAACCTGAGAATCAGAGCTGCAG 550
consensus_1649#1 ------------------------------------------------------------
consensus_1649#0 CCAGCAGGACAACCCCACCCAGCACGTAGTCTACCCACTGCTGCTGCTGGGTCAGCTCCT 610
consensus_1649#1 ------------------------------------------------------------
consensus_1649#0 GCTGGGAATTGGTGCTGTTCCCATCCAGCCTTTTGGCATCTCCTACATTGATGACCAT 668
consensus_1649#1 ----------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |