These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1669#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 550 fasta sequence [GAGTGGAGCCTGCGGCTTAATTTGACTCAACGGGGGAAACCTCACCCGGCCCGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGCGCATGGCCGTTCTTAGTTGGAGGAGCGATTTGTCTGGGTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGGCCCGTGCGGACGGGGTCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGAGGTCCGGGGCTGCACGCGCGCCACACTGAGCGGACCAGCGTGTGTCTACCCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCACTCGTGATGGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGAGGTCGGTCACGGCCGCC] [+] EMBL CA845252 [GAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGCCCCGTGCGGTCGGCGTCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCCACACTGAGCGGACCAGCGTGTGTCTACCCTGCGCCGAGAGGCGCGGGTAACCCGCTGAACCCCACTCGTGATGGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCCCAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGAGGTCGGTCACGGCCGCC] [+] EMBL FR0059013 [ CTGCGGCTTAATTTGACTCAACGGGGGAAACCTCACCCGGCCCGGACACGTAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGCGCATGGCCGTTCTTAGTTGGAGGAGCGATTTGTCTGGGTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGGCCCGTGCGGACGGGGTCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGAGGTCCGGGGCTGCAC ] consensusID : consensus_1669#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 181 fasta sequence [ACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGCCCCGTGCGCCTTCTACATCGTTGAAATAAATATAGATTCTA] [+] EMBL CA333589 [ACACGGAAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGGCATGCTAAATAGTTACGCGGCCCCGTGCGCCTTCTACATCGTTGAAATAAATATAGATTCTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1669#0 GAGTGGAGCCTGCGGCTTAATTTGACTCAACGGGGGAAACCTCACCCGGCCCGGACACGG 60 consensus_1669#1 ------------------------------------------------------ACACGG 6 ****** consensus_1669#0 AAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGCGCATGGCCGTTC 120 consensus_1669#1 AAAGGATTGACAGATTGATAGCTCTTTCTCGATTCTGTGGGTGGTGGTGCATGGCCGTTC 66 *********************************************** ************ consensus_1669#0 TTAGTTGGAGGAGCGATTTGTCTGGGTAATTCCGATAACGAACGAGACTCCGGCATGCTA 180 consensus_1669#1 TTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCCGGCATGCTA 126 ******** **************** ********************************** consensus_1669#0 AATAGTTACGCGGGCCCGTGCGGACGGGGTCCAACTTCTTAGAGGGACAAGTGGCGTTCA 240 consensus_1669#1 AATAGTTACGCGGCCCCGTGC-----GCCTTCTACATCGTTGAAATAAATATAGATTCTA 181 ************* ******* * * * ** ** * ** * * * * * * consensus_1669#0 GCCACGCGAGATTGAGCAATAACAGGTCTGTGATGCCCTTAGAGGTCCGGGGCTGCACGC 300 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 GCGCCACACTGAGCGGACCAGCGTGTGTCTACCCTGCGCCGAGAGGCGCGGGTAACCCGC 360 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 TGAACCCCACTCGTGATGGGGATTGGGGATTGCAATTATTTCCCATGAACGAGGAATTCC 420 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 CAGTAAGCGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCC 480 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 GTCGCTACTACCGATTGGATGGTTTAGTGAGGTCCTCGGATCGGCCCCGCCGAGGTCGGT 540 consensus_1669#1 ------------------------------------------------------------ consensus_1669#0 CACGGCCGCC 550 consensus_1669#1 ---------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |