These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CATTGCGATTATCAGACGCCATGTGTTAAGCGTTTTCCGGGTTTCCAAGTGCACCTGCTTTTTCCCGACAGTGTCTGTTATGGTGGCAATAAAGATAAATGGCTGCGAGAGTGGGTCTTTCTCCTTCCTCGGCTACCTTACACATCAGCCCTTCTCACCATTTCCTTCTCTTTCTCCCTGGCTGTGGTCAGAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCAGACCCCATGGACATGGAGGTCTGCCTGACCAAAATCAGACACAAAGTGACTATGCACGACTTTGAATACCTCAAACTCCTGGGAAAAGGCACTTTTGGCAAAGTTATCCTGGTTAAGGAGAAGGCAACGGGACACTACTATGCCATGAAGATCCTAAAGAAGGAGGTGATTGTAGCAAAAGATGAAGTGGCTCACACACTCACAGAGAACAGAGTCCTCCAGAACTCAAAGCATCCATTCTTGACGGGACTG] [+] EMBL BU807485 [CATTGCGATTATCAGACGCCATGTGTTAAGCGTTTTCCGGGTTTCCAAGTGCACCTGCTTTTTCCCGACAGTGTCTGTTATGGTGGCAATAAAGATAAATGGCTGCGAGAGTGGGTCTTTCTCCTTCCTCGGCTACCTTACACATCAGCCCTTCTCACCATTTCCTTCTCTTTCTCCCTGGCTGTGGTCAGAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCAGACCCCATGGACATGGAGGTCTGCCTGACCAAAATCAGACACAAAGTGACTATGCACGACTTTGAATACCTCAAACTCCTGGGAAAAGGCACTTTTGGCAAAGTTATCCTGGTTAAGGAGAAGGCAACGGGACACTACTATGCCATGAAGATCCTAAAGAAGGAGGTGATTGTAGCAAAAGATGAAGTGGCTCACACACTCACAGAGAACAGAGTCCTCCAGAACTCAAAGCATCCATTCTTGACGGGACTG] consensusID : consensus_1805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [TTTGGGAGGTGTAGTGGAAGAAAGGCAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCACATTGTTGAAGGACTTATCAACTTATTATACCGCTGAAACATCTCCCTAGAATGAAACGGACGCGCTGTTGAATCCCTGCCCAGGTAAACGTCCGCGCTTCCGTCGCACGGTTAGACTACAAGAGGTCGACAGCTAGACAGGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAGGACCCCGTCTCAAGCTCCTCCACAGGGCTGAGGGAAGCAAACTTGGGAAACAAAGCTGCAGCTCTCCTTGTGGGAAACCTGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGTGATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAGGTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGTTGACCAGCTGGAATCCCCCTTAAATAACTTCTCTGTCGCACAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAA] [+] EMBL CA591059 [TTTGGGAGGTGTAGTGGAAGAAAGGCAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCACATTGTTGAAGGACTTATCAACTTATTATACCGCTGAAACATCTCCCTAGAATGAAACGGACGCGCTGTTGAATCCCTGCCCAGGTAAACGTCCGCGCTTCCGTCGCACGGTTAGACTACAAGAGGTCGACAGCTAGACAGGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAGGACCCCGTCTCAAGCTCCTCCACAGGGCTGAGGGAAGCAAACTTGGGAAACAAAGCTGCAGCTCTCCTTGTGGGAAACCTGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGTGATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAGGTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGTTGACCAGCTGGAATCCCCCTTAAATAACTTCTCTGTCGCACAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAA] consensusID : consensus_1805#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCACATTGTTGAAGGACTTATCAACTTATTATACCGCTGAAACATCTCCCTAGAATGAAACGGACGCGCTGTTGAATCCCTGCCCAGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAGGACCCCGTCTCAAGCTCCTCCACAGGGCTGAGGGAAGCAAACTTGGGAAACAAAGCTGCAGCTCTCCTTGTGGGAAACCTGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGTGATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAGGTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGTTGACCAGCTGGAAACCCCCTTAAATAACTTCTCTGTCGCACAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCA] [+] EMBL BU806417 [CAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCACATTGTTGAAGGACTTATCAACTTATTATACCGCTGAAACATCTCCCTAGAATGAAACGGACGCGCTGTTGAATCCCTGCCCAGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAGGACCCCGTCTCAAGCTCCTCCACAGGGCTGAGGGAAGCAAACTTGGGAAACAAAGCTGCAGCTCTCCTTGTGGGAAACCTGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGTGATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAGGTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGTTGACCAGCTGGAAACCCCCTTAAATAACTTCTCTGTCGCACAATGCCAGCTGATGAAGACAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1805#1 TTTGGGAGGTGTAGTGGAAGAAAGGCAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCA 60 consensus_1805#2 -------------------------CAAAGAAACGGAGTAAATGAGAGCACTTTTGTCCA 35 consensus_1805#0 ---------------------CATTGCGATTATCAGACGCCATGTGTTAAGCGTTTTCCG 39 * * * ** *** * * ** *** consensus_1805#1 CATTGTTGAAGG-ACTTATCAACTTATTATACCG-CTGAAACA-TCTCCCTAGAATGAAA 117 consensus_1805#2 CATTGTTGAAGG-ACTTATCAACTTATTATACCG-CTGAAACA-TCTCCCTAGAATGAAA 92 consensus_1805#0 GGTTTCCAAGTGCACCTGCTTTTTCCCGACAGTGTCTGTTATGGTGGCAATAAAGATAAA 99 ** * * ** * * * * * *** * * * ** * *** consensus_1805#1 CGGACGCGCTGTTGAATCCCTGCCCAGGTAAACGTCCGCGCTTCCGTCGCACGGTTAGAC 177 consensus_1805#2 CGGACGCGCTGTTGAATCCCTGCCCAGGTAA----------------------------- 123 consensus_1805#0 TGGCTGCGAGAGTGGGTCTTTCTCCTTCCTCGGCTACCTTACACATCAGCCCTTCT---- 155 ** *** ** ** * ** consensus_1805#1 TACAAGAGGTCGACAGCTAGACAGGGTAACCACCGGTGACGAGGCGGTTGTAAACCCCAG 237 consensus_1805#2 -----------------------------CCACCGGTGACGAGGCGGTTGTAAACCCCAG 154 consensus_1805#0 CACCATTTCCTTCTCTTTCTCCCTGGCTGTGGTCAGAATGCCAGCTGATGAAGACAGAAC 215 * * ** * ** * ** * consensus_1805#1 GACCCCGTCTCAAGCTCCTCCACAGG-GCTGAGGGAAGCAAACTTGGGAAACAAAGCTGC 296 consensus_1805#2 GACCCCGTCTCAAGCTCCTCCACAGG-GCTGAGGGAAGCAAACTTGGGAAACAAAGCTGC 213 consensus_1805#0 GACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCGAGC-GC 274 ***** * *** ** ** **** * ** ** * * *** ** consensus_1805#1 AGCTCTCCTTGTGGGAAACC-TGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGT 355 consensus_1805#2 AGCTCTCCTTGTGGGAAACC-TGGATCCTCCACCCTGCCCACCAACATGACCAATGTGGT 272 consensus_1805#0 A-CCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCAAGCAGT 333 * * *** **** * ** ** ** ** * * * * ** consensus_1805#1 GATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAG 415 consensus_1805#2 GATTGTCAAGGAGGGATGGCTGCATAAAAGAGGAGAATATATCAAGACCTGGAGGCCAAG 332 consensus_1805#0 GGCTG---------AAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCAGA 384 * ** * * ***** ** ** ** * ** * * ** *** consensus_1805#1 GTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGT 475 consensus_1805#2 GTATTTTCTTCTGAAGACTGATGGTACCTTCATCGGCTACAAAGAAAGGCCGCAAGATGT 392 consensus_1805#0 CCCCATGGACATGGAGGTCTGCCTGACCAAAATCAGACACAAAGTGACTATGCACGACTT 444 * ** ** *** *** * ****** * *** ** * consensus_1805#1 TGACCAGCTGGAATCCCCCTTAAATAACTTCTCTGTCGCA-CAATGCCAGCTGATGAAGA 534 consensus_1805#2 TGACCAGCTGGAAACCCCCTTAAATAACTTCTCTGTCGCA-CAATGCCAGCTGATGAAGA 451 consensus_1805#0 TGAATACCTCAAACTCCTGGGAAAAGGCACTTTTGGCAAAGTTATCCTGGTTAAGGAGAA 504 *** * ** ** ** *** * * ** * * ** * * * * ** * consensus_1805#1 CAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCG 594 consensus_1805#2 CAGAACGACCCAAGCCCAACACATTCATCATCCGCTGCCTGCAGTGGACCACTGTCATCG 511 consensus_1805#0 GGCAACGGGACACTACTATGCCATG-AAGATCCTAAAGAAGGAGGTGATTGTAGCAAAAG 563 **** ** * * *** * **** * ** ** * * * consensus_1805#1 A--GCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAA-------------------- 632 consensus_1805#2 A--GCGCACCTTCCACGTGGATACCCCTGAGGAGAGGGAAGAATGGACAAAAGCCATCCA 569 consensus_1805#0 ATGAAGTGGCTCACACACTCACAGAGAACAGAGTCCTCCAGAACTCAAAGCATCCATTCT 623 * * ** *** * * ** * consensus_1805#1 ------------------------------------------------------- consensus_1805#2 AGCAGTGGCTGAAGGCCTGCAGAAGCAAGAGGAGGAGATGATGGACTCCTCTCCA 624 consensus_1805#0 TGACGGGACTG-------------------------------------------- 634 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |