These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1808#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 626 fasta sequence [AAGAAACACAAAAAGCAAGAGGAGGGTGGCTGAGTTTAGGTCCATGTTCAGCAGCCCGTCCCATCACCCAACATGTACTCTTCAGCTGGAGTCTGTGGACCCAGTTCCAGCGTCTGTTGGTCGACGCTGGCGGGGATCCACGAAGCAGAACATGGTGGCTCTGCAGCAGCTGGAGGGAGATGATATTGTCTCCACTACAGTCAGTTCAGACGACCAAGCCCCTCGTATCAAAGCAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCTTCAGAGCTCCTGCAGCTGGAAACCTTAACTTGGGGCAGCGGTCTACCCGTGGGCCTGAGGGAAGTAGAGATGATACAGCATCAACAGGCGAAACGAGCCCTTGAAGCCAAACTTCCTCCTCTGGATGACCTCAGTCAGCTGGACAAAAGGAGAAAGATGATGGAGGAGATGGAGGCCCAAGAATGGGGCTTTCAGAGAGGCAGAAATCCAGAAGTTACATGAGGAGCGCCACGCTGTATCAGTGGACCTGCTGAAACAGAGAGTTATGAGTCAAGAGAAAGCCACCAATCAGACACTGAACCAACTA] [+] EMBL CA333274 [AAGAAACACAAAAAGCAAGAGGAGGGTGGCTGAGTTTAGGTCCATGTTCAGCAGCCCGTCCCATCACCCAACATGTACTCTTCAGCTGGAGTCTGTGGACCCAGTTCCAGCGTCTGTTGGTCGACGCTGGCGGGGATCCACGAAGCAGAACATGGTGGCTCTGCAGCAGCTGGAGGGAGATGATATTGTCTCCACTACAGTCAGTTCAGACGACCAAGCCCCTCGTATCAAAGCAGGGGTCCAGACATATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCTTCAGAGCTCCTGCAGCTGGAAACCTTAACTTGGGGCAGCGGTCTACCCGTAGGCCTGAGGGAAGTAGAGATGATACAGCATCAACAGGCGAAACGAGCCCTTGAAGCCAAACTTCCTCCTCTGGATGACCTCAGTCAGCTGGACAAAAGGAGAAAGATGATGGAGGAGATAGAGGCCCAAGACT GGGCTTTCAGAGAGGCAGAAATCCAGAAGTTACATGAGGAGCGCCACGCTGTATCAGTGGACCTGCTGAAACAGAGAGTTATGAGTCAAGAGAAAGCCACCAATCAGACACTGAACCAACTA] [+] EMBL CA590403 [ ATCACCCAACATGTACTCTTCAGCTGGAGTCTGTGGACCCAGTTCCAGCGTCTGTTGGTCGACGCTGGCGGGGATCCACGAAGCAGAACATGGTGGCTCTGCAGCAGCTGGAGGGAGATGATATTGTCTCCACTACAGTCAGTTCAGACGACCAAGTCCCTCGTATCAAAGCAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCTTCAGAGCTCCTGCAGCTGGAAACCTTAACTTGGGGCAGCGGTCTACCCGTGGGCCTGAGGGAAGTAGAGATGATACAGCATCAACAGGCGAAACGAGCCCTTGAAGCCAAACTTCCTCCTCTGGATGACCTCAGTCAGCTGGACAAAAGGAGAAAGATGATGGAGGAGATGGAGGCCCAAGAATGGGGCTTTCAAAGAGGC ] consensusID : consensus_1808#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [GCTGTACGATAAAAATAAGCAAAATGAGCACAACGGCAACTCTTGAAATCCCTCCGAAGAAAACAGCTAAAGTAGTTAGACGACAACGCGCTTATGATTATCTGTACGATCCGGTTTTCACGGTTTCCTCCGAGGTGGACCATTACCGGGCCGGTCTCAAGGCCCAAGCAACCAAAGACCGATTTAGGAGGGTGGCTGAGTTTAAGTCCATGTTCAGCAGCCTGTCCCATCACCCAACATATTCGCTTCAGCTGGACTCTGTGGACCCAGTTCCAGCATTTATTGGCCGACGGTGGCGAGGCCCTACGGAGCAGAACATGGTGGCTCTGCAGCAGCTGGCGGGTGTTGTTCCAAATTCGCAGTCATGGTTGAAAAAGGAAGAGTGCCAAATAAGAGGAACTGATCGCTGGAAATACTTCAAATGCCCTCAGATTCCTTTTGAGCAGCAGCTTTCACCAGGTGGAATCTCTGCTTTGCCTGGAGATGATATTGTCTCCACTACAGTCAGTTCAGATGACCGACCCACTCATGTCACAGTAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCT] [+] EMBL CA590602 [GCTGTACGATAAAAATAAGCAAAATGAGCACAACGGCAACTCTTGAAATCCCTCCGAAGAAAACAGCTAAAGTAGTTAGACGACAACGCGCTTATGATTATCTGTACGATCCGGTTTTCACGGTTTCCTCCGAGGTGGACCATTACCGGGCCGGTCTCAAGGCCCAAGCAACCAAAGACCGATTTAGGAGGGTGGCTGAGTTTAAGTCCATGTTCAGCAGCCTGTCCCATCACCCAACATATTCGCTTCAGCTGGACTCTGTGGACCCAGTTCCAGCATTTATTGGCCGACGGTGGCGAGGCCCTACGGAGCAGAACATGGTGGCTCTGCAGCAGCTGGCGGGTGTTGTTCCAAATTCGCAGTCATGGTTGAAAAAGGAAGAGTGCCAAATAAGAGGAACTGATCGCTGGAAATACTTCAAATGCCCTCAGATTCCTTTTGAGCAGCAGCTTTCACCAGGTGGAATCTCTGCTTTGCCTGGAGATGATATTGTCTCCACTACAGTCAGTTCAGATGACCGACCCACTCATGTCACAGTAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1808#0 -------AAGAAACACAAAAAGCAAGAGGAGGGTGGCTGAGTTT-AGGTCCATGTTCAGC 52 consensus_1808#1 GCTGTACGATAAAAATAAGCAAAATGAGCACAACGGCAACTCTTGAAATCCCTCCGAAGA 60 * *** * ** * * *** * *** ** * *** * ** consensus_1808#0 AGCCCGTCCCATCACCCA-ACATGTACTCTTCAGCTGGAGTCTGTG-GACCCAGTTCCAG 110 consensus_1808#1 AAACAGCTAAAGTAGTTAGACGACAACGCGCTTATGATTATCTGTACGATCCGGTTTTCA 120 * * * * * * ** ** * ***** ** ** *** consensus_1808#0 CGTCTGTTGGTCGACGCTGGCGGGGATCCACGAAGCAGAACATGGTGGCTCTGCAGCAGC 170 consensus_1808#1 CGGTT-TCCTCCGA----GGTGGACCATTACCGGGCCGGTC-TCAAGGCCCA--AGCAAC 172 ** * * *** ** ** ** ** * * * *** * **** * consensus_1808#0 TGGAGGGAGAT----GATATTGTCTCCACTACAGTCAGT-TCAGACGACCAAGCCCCTCG 225 consensus_1808#1 CAAAGACCGATTTAGGAGGGTGGCTGAGTTTAAGTCCATGTTCAGCAGCCTGTCCCATCA 232 ** *** ** ** ** * **** * * * ** *** ** consensus_1808#0 TATCAAAGCAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGACCCCTACAG 285 consensus_1808#1 CCCAACATATTCGCTTCAGCTGGACTCTGTGGAC--CCAGTTCCAG-----CATTTATTG 285 * * * * *** ** * *** ** *** * ** * consensus_1808#0 CCCTGAATATGTGCTGCAGCCAGGAGCAACACCTT-CAGAGCTCCTGCAGCTGG-AAACC 343 consensus_1808#1 GCCGACGGTGGCGAGGCCCTACGGAGCAGAACATGGTGGCTCTGCAGCAGCTGGCGGGTG 345 ** * * ** ****** ** * * ** * ******** consensus_1808#0 TTAACTTGGGGCAGCGGTCTACCCGTGGGCCTGAGGGAAGTAGAGATGATACAGCATCAA 403 consensus_1808#1 TTGTTCCAAATTCGCAGTCA--TGGTTGAAAAAGGAAGAGTGCCAAATAAGAGGAACTGA 403 ** ** *** ** * * *** * * * * * consensus_1808#0 CAGGCGAAACGAGCCCTTGAAGCCAAACTTCCTCCTCTGGATGACCTCAGTCAGCTGGAC 463 consensus_1808#1 TCGCTGGAAATA-CTTCAAATGCCCTCAGATTCCTTTTGAGCAGCAGCTTTCACCAGGTG 462 * * ** * * * *** * * ** * * *** * ** consensus_1808#0 AAAAGGAGAAAGATGATGGAGGAGATGGAGGCCCAAGAATGGGGCTTTCAGAGAGGCAGA 523 consensus_1808#1 GAATCTCTGCTTTGCCTGGAGATGATATTGTCTCCACTACAGTCAGTTCAGAT-GACCGA 521 ** ***** *** * * * * * * ****** * * ** consensus_1808#0 AATCCAGAAGTTACATGAGGAGCGCCACGCTGTATCAGTGGACCTGCTG---AAACAGAG 580 consensus_1808#1 CCCACTCATGTCACAGTAGGGGTCCAGACAGATTACAGGGAAAGTGAGGCGCAGACAGAC 581 * * ** *** *** * * * *** * * ** * * ***** consensus_1808#0 AGTTATGAGTCAAGAGAAAGCCACCAATCAGACACTGAACCAACTA 626 consensus_1808#1 CCCTACAGCCCTGAATATGTGCTGCAGCCAGGAGCAACACCT---- 623 ** * * * * ** *** * *** |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |