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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 730 fasta sequence
[TCCTTACTCCGATAGACTGTCGACACGTCCAAGTTAAATTCCTTCTTTCGCCCCACCATTATTGTTCTAGTCCACAGCTCTGAGTGCTGAACAAATCTGGAATCTTGTATTAAACCTGATAGAGTAATCAGACACTTTGTTCCTGAAGTTCCCTCTCAAGTACCCAACGCCGTCACGCTGGAGTTCCACCAGATCAGAGCTCTGATCTGCCTGACCTGAATCAGAAAAACAGGTTTTTACCAATTCACACGGAGACTAATGCAACGGTTTTTGATGTTAAATTTAAACGTTTGGCTCCATGTTGACCGGCGTCCCAGGCGGGCCCTTAATCAGATGTTTTGGCTAAAATATTTTCAAAATCCGGGCAAATTTAGAGCTGAACCGGTGGGGATCTATGGTCTTTGTGGCCTCTTTATGGCTGTGGTGTTTGTGCGTGTTTCAGGCAGATGATTGTGTGGACAACAGCGTCTGAACTGCTGCAGTTACAGGAGCGACCTTTACACAGACATCAGCGACCTTTACACACACATCAGCCACCACTTCACCAGTGTTATTAATTTATTCTGTAAATTAACAAAGAGGCAAAGCACAGTTTGGTTTAAAGCTTGATGATGATTAGAGTCTATTGAATAAAATGGTTGGGAAATGACCTGACATCTCATGTTAAATTGATGACTGCTCTAATACACACACACACACTCACACACACACACACACACACACATGCCTA]
[+] EMBL CA588158 [TCCTTACTCCGATAGACTGTCGACACGTCCAAGTTAAATTCCTTCTTTCGCCCCACCATTATTGTTCTAGTCCACAGCTCTGAGTGCTGAACAAATCTGGAATCTTGTATTAAACCTGATAGAGTAATCAGACACTTTGTTCCTGAAGTTCCCTCTCAAGTACCCAACGCCGTCACGCTGGAGTTCCACCAGATCAGAGCTCTGATCTGCCTGACCTGAATCAGAAAAACAGGTTTTTACCAATTCACACGGAGACTAATGCAACGGTTTTTGATGTTAAATTTAAACGTTTGGCTCCATGTTGACCGGCGTCCCAGGCGGGCCCTTAATCAGATGTTTTGGCTAAAATATTTTCAAAATCCGGGCAAATTTAGAGCTGAACCGGTGGGGATCTATGGTCTTTGTGGCCTCTTTATGGCTGTGGTGTTTGTGCGTGTTTCAGGCAGATGATTGTGTGGACAACAGCGTCTGAACTGCTGCAGTTACAGGAGCGACCTTTACACAGACATCAGCGACCTTTACACACACATCAGCCACCACTTCACCAGTGTTATTAATTTATTCTGTAAATTAACAAAGAGGCAAAGCACAGTTTGGTTTAAAGCTTGATGATGATTAGAGTCTATTGAATAAAATGGTTGGGAAATGACCTGACATCTCATGTTAAATTGATGACTGCTCTAATACACACACACACACTCACACACACACACACACACACACATGCCTA]
consensusID : consensus_1817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 522 fasta sequence
[GAGCCGAGCTGTACACCGCCCCCGGCATCATGCGTCCGCAGAAACGACTTGTGAAGGGGGCACAAGTTCCGAACTTCAGATTTCCCTGCTTGAATTCTCACCAACATTATAGGGTCCAACGCTGTGTGGCACACTAGTGAACGACTTTATGTCACCCGGAAAGTGGCGTTAAGTTAAGCTTCTTTTATCGGATTTATAGTCAACTAGAACAACCTGTTCTGCACGACTCCGGCATGGACGCGGTTGTTAAATTCACGAATCAAAGTCAAGGGAGGGACCGTATATTCAGAGCCACCCAGTATGCTTGTGCACTGTCGATCTATTTACTTCGAAATAACCCGGAGAAAAAGGATCTTGTGGCTAAACTCAAAGGCCTCGAAGCCAGTATGAGCGCTGGACGAAAACTGCCCAGACAAGTACCCAACGCCGTCACGCTGGAGTTCCACCAGATCAGACCTCTGATCTGCCTGAGCTGAAAGACAAGAATCAGAAAAACAGTGTTCAGACTGGGGAACACGGTCA]
[+] EMBL BU806293 [GAGCCGAGCTGTACACCGCCCCCGGCATCATGCGTCCGCAGAAACGACTTGTGAAGGGGGCACAAGTTCCGAACTTCAGATTTCCCTGCTTGAATTCTCACCAACATTATAGGGTCCAACGCTGTGTGTCACACTAGTGAACGACTTTATGTCACCCGGAAAGTGGCGTTAAGTTAAGCTTCTTTTATCGGATTTATAGTCAACTAGAACAACCTGTTCTGCACGACTCCGGCATGGACGCGGTTGTTAAATTCACGAATCAAAGTCAAGGGAGGGACCGTATATTCAGAGCCACCCAGTATGCTTGTGCACTGTCGATCTATTTACTTCGAAATAACCCGGAGAAAAAGGATCTTGTGGCTAAACTCAAAGGCCTCGAAGCCAGTATGAGCGCTGGACGAAAACTTCCCTCTCAAGTACCCAACGCCGTCACGCTGGAGTTCCACCAGATCAGACCTCTGATCTGCCTGAGCTGAAAGACAAGAATCAGAAAAACAGTGTTCAGACTGGGGAACACGGTCA]
[+] EMBL FR0058731 [ TCAGATTTCCCTGCTTGAATTCTCACCAACATTATAGGGTCCAACGCTGTGTGGCACACTAGTGAACGACTTTATGTCACCCGGAAAGTGGCGTTAAGTTAAGCTTCTTTTATCGGATTTATAGTCAACTAGAACAACCTGTTCTGCACGACTCCGGCATGGACGCGGTTGTTAAATTCACGAATCAAAGTCAAGGGAGGGACCGTATATTCAGAGCCACCCAGTATGCTTGTGCACTGTCGATCTATTTACTTCGAAATAACCCGGAGAAAAAGGATCTTGTGGCTAAACTCAAAGGCCTCGAAGCCAGTATGAGCGCTGGACGAAAACTGTTCAGA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1817#0 TCCTTACTCCGATAGACTGTCGACACGTCCAAGTTAAATTCCTTCTTTCGCCCCACCATT 60
consensus_1817#1 ------------------------------GAGCCGAGCTG-TACACCGCCCCCGGCATC 29
** * * * * **** ***
consensus_1817#0 AT-TGTTCTAGTCCACAGCTC-TGAGTGCTGAACAAATCTGGAATCTTGTATTAAACCTG 118
consensus_1817#1 ATGCGTCCGCAGAAACGACTTGTGAAGGGGGCACAAGTTCCGAACTTCAGATTTC-CCTG 88
** ** * ** ** *** * * **** * *** * *** ****
consensus_1817#0 ATAGAGTAATCAGACACTTTGTTCCTGAAGTTCCCTCTCAAGTACCCAACGCCGTCACGC 178
consensus_1817#1 CTTGAATTCTCACCAACATTAT------------------AGGGTCCAACGCTGT----- 125
* ** * *** ** ** * ** ******* **
consensus_1817#0 TGGAGTTCCACCAGATCAGAGCTCTGATCTGCCTGACCTGAATCAGAAAAACAGGTTTTT 238
consensus_1817#1 --GTGGCACACTAGTGAACGACTTTATGTCACCCGGAAAGTGGCGTTAAGTTAAGCTTCT 183
* * *** ** * ** * ** * * * ** * * ** *
consensus_1817#0 ACCAATTCACACGGAGACTAATGCAACGGTTTTTGATGTTAAATTTAAACGTTTGGCTCC 298
consensus_1817#1 TTTATCGGATTTATAGTCAACTAGAACAACCTGTTCTGCACGACTCCGGCAT--GGACGC 241
* * ** * * * *** * * ** * * * * ** *
consensus_1817#0 ATGTTGACCGGCGTCCCAGGCGGGCCCTTAATCAGATGTTTTGGCTAAAATATTTTCAAA 358
consensus_1817#1 G-GTTGTTAAATTCACGAATCAA------AGTCAAGGG----AGGGACCGTATATTCAGA 290
**** * * * * *** * * * *** **** *
consensus_1817#0 ATCCGGGCAAATTTAGAGCTGAACCGGTGGGGATCTATGGTCTTTGTGGCCTCTTTATGG 418
consensus_1817#1 GCC--ACCCAGTAT---GCTTGTGCACTGTCGATCTATTTACTTCGAAATAACCCGGAGA 345
* * * * * *** * ** ******* *** * * *
consensus_1817#0 CTGTGGTGTTTGTGCGTGTTTCAGGCAGATGATTGTGTGGACAACAGCGTCTGAACTGCT 478
consensus_1817#1 AAAAGGATCTTGTG---GCTAAACTCAAA-GGCCTCGAAGCCA-----GTATGAGC-GCT 395
** ***** * * * ** * * * * ** ** *** * ***
consensus_1817#0 GCAGTTACAGGAGCGACCTTTACACAGACATCAGCGACCTTTACACACACATCAGCCACC 538
consensus_1817#1 G----GACGAAAACTGCC--CAGACAAGTACCCAACGCCGTCACGCTGGAGTT--CCACC 447
* ** * * ** * *** * * ** * ** * * *****
consensus_1817#0 ACTTCACCAGTGTTATTAATTTATTCTGTAAATTAACAAAGAGGCAAAGCACAGTTTGGT 598
consensus_1817#1 AGATCAGACCTCTGATCTGCCTGAGCTGAAAGACAAGAATCAGA-AAAACAGTGTTCAGA 506
* *** * * ** * *** ** ** ** ** *** ** *** *
consensus_1817#0 TTAAAGCTTGATGATGATTAGAGTCTATTGAATAAAATGGTTGGGAAATGACCTGACATC 658
consensus_1817#1 CTGGGGAAC-ACGGTCA------------------------------------------- 522
* * * * * *
consensus_1817#0 TCATGTTAAATTGATGACTGCTCTAATACACACACACACACTCACACACACACACACACA 718
consensus_1817#1 ------------------------------------------------------------
consensus_1817#0 CACACATGCCTA 730
consensus_1817#1 ------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |