These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [CTCGAGACTGTTTGTTGTATCTCATACTTTTGGGAAGCCCTTTACCATGTCGCATACCGCCAAGTTCGTCTCCAGCCAGGTCACCGATGCCAAGGACAAGGGAGCCCCAGCTGCCTCCAGCAAGGCCACCAAGACTGGCGAGCCTAGCCTGGGATCCTTCAGAATCCTGCTGTTCGACCAGGAGAACTTCCAGGGCAGGATGGTCGAGGTCCAGAATGAGTGTATGAACGTGTGTGACCATGGCATGGATAGAGTGCGTAGTATCATTGTGGAGAGCGGCCCCTTTGTTGCCTTTGAGCAGACTAACTTCCGTGGNGAGATGTTCATCCTGGAGAAGGGAGAGTATCCTCGCTGGGATACCTGGAGCAACTCCTACCGCAGTGACCGCCTCTTGTCCATCAGGCCCATCCGCATGGACAGCATGGAGCACAAGATCTGCCTGTTTGAGCTCTCTGACTTTAAGGGCAACAAGATGGAGATCCAGGGAGATGATGTGCCCACCCT] [+] EMBL FR0057789 [CTCGAGACTGTTTGTTGTATCTCATACTTTTGGGAAGCCCTTTACCATGTCGCATACCGCCAAGTTCGTCTCCAGCCAGGTCACCGATGCCAAGGACAAGGGAGCCCCAGCTGCCTCCAGCAAGGCCACCAAGACTGGCGAGCCTAGCCTGGGATCCTTCAGAATCCTGCTGTTCGACCAGGAGAACTTCCAGGGCAGGATGGTCGAGGTCCAGAATGAGTGTATGAACGTGTGTGACCATGGCATGGATAGAGTGCGTAGTATCATTGTGGAGAGCGGCCCCTTTGTTGCCTTTGAGCAGACTAACTTCCGTGGNGAGATGTTCATCCTGGAGAAGGGAGAGTATCCTCGCTGGGATACCTGGAGCAACTCCTACCGCAGTGACCGCCTCTTGTCCATCAGGCCCATCCGCATGGACAGCATGGAGCACAAGATCTGCCTGTTTGAGCTCTCTGACTTTAAGGGCAACAAGATGGAGATCCAGGGAGATGATGTGCCCACCCT] consensusID : consensus_1862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 501 fasta sequence [GAGATAAGTCCAAGGCTTCTTCCCAGACTGACGGTAAAACAGCCCAGGGTAAGAGGTCCGAGATGGGAATGTCTTACAAAATGTACGTGTTTGACCAGGAGAACTTCCAGGGTCGCATGGCTGAGATCAACAACGAGTGCATGAATGTATGTGAGCTGGGCATCGACCGCGTTCGCTCCCTGCGCGTCGAGTCTGGACCGTATGTGGGCTTCGAGCAGATGAACCTCTGCGGCGAGATGTACATCCTGGAGAAGGGAGAGTATCCTCGCTGGGACTCCTGGAGCAACAGCCAGAAGAACGACTACCTGCTGTCTTTCAGGCCTGTCAAAATGGACCCTGAGAAGCACAAGATCTGCCTGTACGAGGTTGGGGAGTTCAAGGGCCGCAAAATGGAGATCATGGGCGACGACGTTCCCAGTCCGTTCTCNCACGGNGTCACTGACAGGGTGGGCAGCATTACTGTCAGCTGTGGAACCTGGGTGGGAATACAGTTCCCCGGAT] [+] EMBL FR0057707 [GAGATAAGTCCAAGGCTTCTTCCCAGACTGACGGTAAAACAGCCCAGGGTAAGAGGTCCGAGATGGGAATGTCTTACAAAATGTACGTGTTTGACCAGGAGAACTTCCAGGGTCGCATGGTTGAGATCAACAACGAGTGCATGAATGTATGTGAGCTGGGCATCGACCGCGTTCGCTCCCTGCGCGTCGAGTCTGGACCGTATGTGGGCTTCGAGCAGATGAACCTCTGCGGCGAGATGTACATCCTGGAGAAGGGAGAGTATCCTCGCTGGGACTCCTGGAGCAACAGCCAGAAGAACGACTACCTGCTGTCTTTCAGGCCTGTCAAAATGGACCCTGACAAGCACAAGATCTGCCTGTACGAGGTTGGGGAGTTCAAGGGCCGCAACATGGAGATCATGGGCGACGACGTTCCCAGTCCGTTCTCCCACGGAGTCACTGACAGGGTGGGCAGC ] [+] EMBL FR0055319 [ AGATAAGTCCAAGGCTTCTTCCCAGACTGACGGTAAAACAGCCCAGGGTAAGAGGTCCGAGATGGGAATGTCTTACAAAATGTACGTGTTTGACCAGGAGAACTTCCAGGGTCGCATGGCTGAGATCAACAACGAGTGCATGAATGTATGTGAGCTGGGCATCGATCGCGTTCGCTCCCTGCGCGTCGAGTCTGGACCGTATGTGGGCTTCGAGCAGATGAACCTCTGCGGCGAGATGTACATCCTGGAGAAGGGAGAGTATCCTCGCTGGGACTCCTGGAGCAACAGCCAGAAGAACGACTACCTGCTGTCTTTCAGGCCTGTCAAAATGGACCCTGAGAAGCACAAGATCTGCCTGTACGAGGTTGGAGAGTTCAAGGGCCGCAAAATGGAGATCATGGACGACGACGTTCCCAGTCTGTTCTCNCACGGNTTCACTGACAGGGTGGGCAGCATTACTGTCAGCTGTGGAACCTGGGTGGGAATACAGTTCCCCGGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1862#0 CTCGAGACTGTTTGTTGTATCTCATACTTTTGGGAAGCCCTTTACCATGTCGCATACCGC 60 consensus_1862#1 ------------------------------------------------------------ consensus_1862#0 CAAGTTCGTCTCCAGCCAGGTCACCGATGCCAAGGACAAGGGAGCCCCAGCTGCCTCCAG 120 consensus_1862#1 --------------------------GAGATAAGTCCAAGGCTTCTTCCCAGACTGACGG 34 * *** ***** * * * * * consensus_1862#0 CAAGGCCACCAAGACTGGCGAGCCTAGCCTGGGA---TCCTTCAGAATCCTGCTGTTCGA 177 consensus_1862#1 TAAAACAGCCCAGGGTAAGAGGTCCGAGATGGGAATGTCTTACAAAATGTACGTGTTTGA 94 ** * ** ** * * * ***** ** * ** *** **** ** consensus_1862#0 CCAGGAGAACTTCCAGGGCAGGATGGTCGAGGTCCAGAATGAGTGTATGAACGTGTGTGA 237 consensus_1862#1 CCAGGAGAACTTCCAGGGTCGCATGGCTGAGATCAACAACGAGTGCATGAATGTATGTGA 154 ****************** * **** *** ** * ** ***** ***** ** ***** consensus_1862#0 CCATGGCATGGATAGAGTGCGTAGTATCATTGTGGAGAGCGGCCCCTTTGTTGCCTTTGA 297 consensus_1862#1 GCTGGGCATCGACCGCGTTCGCTCCCTGCGCGTCGAGTCTGGACCGTATGTGGGCTTCGA 214 * ***** ** * ** ** * ** *** ** ** * *** * *** ** consensus_1862#0 GCAGACTAACTTCCGTGGNGAGATGTTCATCCTGGAGAAGGGAGAGTATCCTCGCTGGGA 357 consensus_1862#1 GCAGATGAACCTCTGCGGCGAGATGTACATCCTGGAGAAGGGAGAGTATCCTCGCTGGGA 274 ***** *** ** * ** ******* ********************************* consensus_1862#0 TACCTGGAGCAACTCCTACCGCAGTGACCGCCTCTTGTCCATCAGGCCCATCCGCATGGA 417 consensus_1862#1 CTCCTGGAGCAACAGCCAGAAGAACGACTACCTGCTGTCTTTCAGGCCTGTCAAAATGGA 334 *********** * * * *** *** **** ******* ** ***** consensus_1862#0 CAGCATGGAGCACAAGATCTGCCTGTTTGAGCTCTCTGACTTTAAGGGCAACAAGATGGA 477 consensus_1862#1 CCCTGAGAAGCACAAGATCTGCCTGTACGAGGTTGGGGAGTTCAAGGGCCGCAAAATGGA 394 * * ****************** *** * ** ** ****** *** ***** consensus_1862#0 GATCCAGGGAGATGATGTGCCCACCCT--------------------------------- 504 consensus_1862#1 GATCATGGGCGACGACGTTCCCAGTCCGTTCTCNCACGGNGTCACTGACAGGGTGGGCAG 454 **** *** ** ** ** **** * consensus_1862#0 ----------------------------------------------- consensus_1862#1 CATTACTGTCAGCTGTGGAACCTGGGTGGGAATACAGTTCCCCGGAT 501 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |