These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1881#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [AACGATATCATGGCTTTCACTTTGTATTCGCTCATTCTAGCAGCAGTCTTGTGCGTCAATGCCGTCGCTGTACTTCACGAAGAAAGGTTTTTGTGTAAAATCGGTTGGGGAGTGGACCAAAGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGTTCTAATTTGATGTCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGCAGAATGTTTAAATTGACTGTCTAATAAATGGATGTAGTTTA] [+] EMBL CA844744 [AACGATATCATGGCTTTCACTTTGTATTCGCTCATTCTAGCAGCAGTCTTGTGCGTCAATGCCGTCGCTGTACTTCACGAAGAAAGGTTTTTGTGTAAAATCGGTTGGGGAGTGGACCAAAGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGTTCTAATTTGATGTCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGCAGAATGTTTAAATTGACTGTCTAATAAATGGATGTAGTTTA] consensusID : consensus_1881#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 436 fasta sequence [ATTGATATTGAGTTAAGTTTATGTTTGCGCTCAGCGATGAAGGTTGGGGAGTGGGCCAAAGCGTTGGGGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGGACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAAGGGTGACGTTCTAATTTGATGGTCATGGGGCACTTAGTATATTTTTATGGTAAAGGGCTCTACAGAAGCAGAATGTTTAAAGTGACTGTCTAATAAATGGATGTAGTTTAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGG] [+] EMBL FR0057390 [ATTGATATTGAGTTAAGTTTATGTTTGCGCTCAGCGATGAAGGTTGGGGAGTGGGCCAAAGCGTTGGGGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGGACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAAGGGTGACGTTCTAATTTGATGGTCATGGGGCACTTAGTATATTTTTATGGTAAAGGG ] [+] EMBL FR0057382 [ GATATTGAGTTAAGTTTATGTTTGCGCTCAGCGATGAAGGTTGGGGAGTGGACCAAAGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGCTCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTGCTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTCAGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGTTCTAATTTGAT GTCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGCAGAATGTTTAAAGTGACTGTCTAATAAATGGATGTAGTTTAAAAAAAAAAAAAAAAAAAAAAAAACCCCCGGGGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1881#0 AACGATATCATGGCTTTCACTTTGTATTCGCTCATTCTAGCAGCAGTCTTGTGCGTCAAT 60 consensus_1881#1 ------------------------------------------------------------ consensus_1881#0 GCCGTCGCTGTACTTCACGAAGAAAGGTTTTTGTGTAAAATCGGTTGGGGAGTGGACCAA 120 consensus_1881#1 ATTGATATTGAGTTAAGTTTATGTTTGCGCTCA-GCGATGAAGGTTGGGGAGTGGGCCAA 59 * ** * * * * * * ************* **** consensus_1881#0 AGCGTTGGAGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGC 180 consensus_1881#1 AGCGTTGGGGGTTTTGCTGACGAGCCGGGCATCAAAGTCCAGTTAATGAACCTGATCCGC 119 ******** *************************************************** consensus_1881#0 TCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTG 240 consensus_1881#1 TCGGTGAGGACAGTAATGAGAGTGCCTTTGATTGCAGTGAACTCGGTCTGCATCGTGCTG 179 ************************************************************ consensus_1881#0 CTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGAACAAATGATCTTCATCACCTC 300 consensus_1881#1 CTGCTTCTGTTTGGGTGAAGAGGACCGATGGGAGATGGGACAAATGATCTTCATCACCTC 239 ************************************** ********************* consensus_1881#0 AGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAATGATGACGT 360 consensus_1881#1 AGGAATTTTCTACACAACTATGATTTTCTTCGACACCAGCATGACTATGAAGGGTGACGT 299 *************************************************** * ****** consensus_1881#0 TCTAATTTGATG-TCATGGGCCACTTAATATATTTTTATGGTAAAGAACTCTACAGAAGC 419 consensus_1881#1 TCTAATTTGATGGTCATGGGGCACTTAGTATATTTTTATGGTAAAGGGCTCTACAGAAGC 359 ************ ******* ****** ****************** ************ consensus_1881#0 AGAATGTTTAAATTGACTGTCTAATAAATGGATGTAGTTTA------------------- 460 consensus_1881#1 AGAATGTTTAAAGTGACTGTCTAATAAATGGATGTAGTTTAAAAAAAAAAAAAAAAAAAA 419 ************ **************************** consensus_1881#0 ----------------- consensus_1881#1 AAAAACCCCCGGGGGGG 436 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |