These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1901#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGTAAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGATGTGACAACGGGCCAGAGGAAGTATGGCGGTCCCCCACCTGAAGCTGTTCATTCAGGGGCTCAGCCAACCATCGGTACAGAGATATTTGTCGGCAAAATACCCAGAGACCTGTTTGAGGATGAGCTGGTTCCGCTCTTTGAGAAAGCCGGGCCCATCTGGGACCTGCGACTGATGATGGATCCACTCAGCGGCCTGAACAGAGGCTACGCCTTTGTCACTTTCTGCACTAAAGAAGCTGCACAGCAGGCGGTGAAATTG] [+] EMBL BU807914 [CTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGTAAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGATGTGACAACGGGCCAGAGGAAGTATGGCGGTCCCCCACCTGAAGCTGTTCATTCAGGGGCTCAGCCAACCATCGGTACAGAGATATTTGTCGGCAAAATACCCAGAGACCTGTTTGAGGATGAGCTGGTTCCGCTCTTTGAGAAAGCCGGGCCCATCTGGGACCTGCGACTGATGATGGATCCACTCAGCGGCCTGAACAGAGGCTACGCCTTTGTCACTTTCTGCACTAAAGAAGCTGCACAGCAGGCGGTGAAATTG] consensusID : consensus_1901#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 543 fasta sequence [AGAGTGAATGACTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGATTTCTGGAGACATGGCCACAGAACATATTAATGGAAATGGTCCAGAAGACCCAATGGACACCTCTGCTGCAGTTACCCATTCTGAACACTTCCAGACTTTATTAGAAGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATCTACATAGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGTAAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGATGTGACA] [+] EMBL CA590058 [AGAGTGAATGACTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGATTTCTGGAGACATGGCCACAGAACATATTAATGGAAATGGTCCAGAAGACCCAATGGACACCTCTGCTGCAGTTACCCATTCTGAACACTTCCAGACTTTATTAGAAGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATTTACATAGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCATAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAG ] [+] EMBL CA589667 [ GAGTGAATGACTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAAAATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGATTTCTGGAGACATGGCCACAGAACATATTAATGGAAATGGTCCAGAAGACCCAATGGACACCTCTGCTGCAGTTACCCATTCTGAACACTTCCAGACTTTATTAGAAGCTGGTTTACCACAGAAAGTTGCTGAAAAACTAGATGAAATCTACATAGCAGGTCTGGTGTCACACAGTGACTTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTTCTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGTGGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGTAAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGATGTGACA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1901#0 ------------------------------------------------------------ consensus_1901#1 AGAGTGAATGACTGGAGCCGGATCAGTGCCGGGAGTTTTACACTTTTCCTGTCTTTTTAA 60 consensus_1901#0 ------------------------------------------------------------ consensus_1901#1 AATCACATTTATCTTCCTTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGATT 120 consensus_1901#0 -------------------------------------------------CTGGAGCCGGA 11 consensus_1901#1 TCTGGAGACATGGCCACAGAACATATTAATGGAAATGGTCCAGAAGACCCAATGGACACC 180 * * * consensus_1901#0 TCAG-TGCCGGGA---GTTTTACACTTTTCCTGTCTTT-TTAAAATCACATTTATCTTCC 66 consensus_1901#1 TCTGCTGCAGTTACCCATTCTGAACACTTCCAGACTTTATTAGAAGCTGGTTTACCACAG 240 ** * *** * * ** * ** **** * **** *** ** * **** * consensus_1901#0 TTAATTACCAACACCATACACGTTGGTGAGCCAGCGGCAGGTCTGGTGTCACACAGTGAC 126 consensus_1901#1 AAAGTTGCTGAAA---AACTAGATGAAATCTACATAGCAGGTCTGGTGTCACACAGTGAC 297 * ** * * * ** * ** ************************ consensus_1901#0 TTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTT 186 consensus_1901#1 TTAGATGATCGAGCCATCGAGGCGCTGAAAGAGTTCAACGAGGAGGGCGCTCTGCAAGTT 357 ************************************************************ consensus_1901#0 CTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGT 246 consensus_1901#1 CTTTTGCAATTTAAGGACAGTGACCTCTCACATGTTCAGAACAAAAGTGCCTTTCTTTGT 417 ************************************************************ consensus_1901#0 GGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGT 306 consensus_1901#1 GGTGTGATGAAGACATACAGGCAGAGAGAGAAACAAGGGACCAAAGTGTCAGACACTAGT 477 ************************************************************ consensus_1901#0 AAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGAT 366 consensus_1901#1 AAAGGACCAGATGAAGCCAAAATCAAAGCTTTGCTGGAGAGGACTGGCTACACACTTGAT 537 ************************************************************ consensus_1901#0 GTGACAACGGGCCAGAGGAAGTATGGCGGTCCCCCACCTGAAGCTGTTCATTCAGGGGCT 426 consensus_1901#1 GTGACA------------------------------------------------------ 543 ****** consensus_1901#0 CAGCCAACCATCGGTACAGAGATATTTGTCGGCAAAATACCCAGAGACCTGTTTGAGGAT 486 consensus_1901#1 ------------------------------------------------------------ consensus_1901#0 GAGCTGGTTCCGCTCTTTGAGAAAGCCGGGCCCATCTGGGACCTGCGACTGATGATGGAT 546 consensus_1901#1 ------------------------------------------------------------ consensus_1901#0 CCACTCAGCGGCCTGAACAGAGGCTACGCCTTTGTCACTTTCTGCACTAAAGAAGCTGCA 606 consensus_1901#1 ------------------------------------------------------------ consensus_1901#0 CAGCAGGCGGTGAAATTG 624 consensus_1901#1 ------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |