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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 646 fasta sequence
[CGGAATGGATATCCCGACCTTCGAAGACAAAGGAAATGTTATAGGAAAAGAGGGTGTGGAGGAAGAGCTGGAGAAGAAGAAAGAAAGAGAAGATGAAAATGAGGATGGAGAAGTGAGAGAAGAAGAAAAAGTTGAATCACCCGGACAGAAGCAGGAAACAGGCTTTTCTCCGCGCATCGGTTTCTTCAATAGTCTGCAGAGAGAGGTGTACTACTATGCCGACGAGAAGATCGTCATAGAAGAGGGGCTTGACTCCTTCGCTGGGATGATATGGGCAGCTGCTCTCGCTCTCTGTCACCACCTGGACTCGCACCGTCAGCAGATCAATCTGGTGGACAAAGGCGGTCCTGGAGCTCGGGGCAGGAACGGGCCTCGGGTCTGTCGTTGCGGCGCTCCTGGGCGCCTGGGTGACGGCCACAGACCTCCCAGTGGTCCTGAACAACCTGACGGCCAATGTGTCAAGAAACACCAGGGGGCGCTGCAGACACACACCCCAGGTAGCAGCTCTGGTTTGGGGTCACGACCTGGAGACCACCTACCCCACATCCGTGTATCGCTACGACTACGTCCTGGCCGCTGACGTGGTCTACCACCACGACTTCCTGAACGAACTCCTGGACACCATGAAGGACTTCTGCAGACCAGG]
[+] EMBL FR0063421 [CGGAATGGATATCCCGACCTTCGAAGACAAAGGAAATGTTATAGGAAAAGAGGGTGTGGAGGAAGAGCTGGAGAAGAAGAAAGAAAGAGAAGATGAAAATGAGGATGGAGAAGTGAGAGAAGAAGAAAAAGTTGAATCACCCGGACAGAAGCAGGAAACAGGCTTTTCTCCGCACATCGGTTTCTTCAATAGTCTGCAGAGAGAGGTGTACTACTATGCCGACGAGAAGATCGTCATAGAAGAGGGGCTTGACTCCTTCGCTGGGATGATATGGGCAGCTGCTCTCGCTCTCTGTCACCACCTGGACTCGCACCGTCAGCAGATCAATCTGGTGGACAAAGGCGGTCCTGGTGCTC GGGCAGGAACGGGCCTCGGGT TGTCGTT ]
[+] EMBL BU805360 [ GCATCGGTTTCTTCAATAGTCTGCAGAGAGAGGTGTACTACTATGCCGACGAGAAGATCGTCATAGAAGAGGGGCTTGACTCCTTCGCTGGGATGATATGGCCAGCTGCTCTCGCTCTCTGTCACCACCTGGACTCGCACCGTCAGCAGATCAATCTGGTGGAC AAGGCGGTCCTGGAGCTCGGGGCAGGAACGGGCCTCGTGTCTGTCGTTGCGGCGCTCCTGGGCGCCTGGGTGACGGCCACAGACCTCCCAGTGGTCCTGAACAACCTGACGGCCAATGTGTCAAGAAACACCAGGGGGCGCTGCAGACACACACCCCAGGTAGCAGCTCTGGTTTGGGGTCACGACCTGGAGACCACCTACCCCACATCCGTGTATCGCTACGACTACGTCCTGGCCGCTGACGTGGTCTACCACCACGACTTCCTGAACGAACTCCTGGACACCATGAAGGACTTCTGCAGACCAGG]
consensusID : consensus_1938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence
[TCTCTTCCTTTATTCCTGCTCTTCCGTCGCAGGCTGGAGATCTCAGGGACCCACGGCTAGGACGCCTGTACGGAAGCAGAAACCAGTAACACTTTTATTCATCCTGGCCCTCGCCCAGATGTCCACGTTGGCATCTACGTGCTCGCTTCTCCTGTATACTGCCTGTGTTTATTCCTCCTGGGCACAAAACTAAAAATAAGCCCATGTCCTTGTGATGAAGATGGGAGTGTCCAGCAGGATGCTGTGTCTGTATAACCTTGCAGCCGGAGATCGCCAGTGAGATCTTTCATGAGAGGATAAAGAGGCGGCAGCGGTCAAGAGTCGGAATGGATATCCCGACCTTCGAAGACAAAGGAA]
[+] EMBL FR0063731 [TCTCTTCCTTTATTCCTGCTCTTCCGTCGCAGGCTGGAGATCTCAGGGACCCACGGCTAGGACGCCTGTACGGAAGCAGAAACCAGTAACACTTTTATTCATCCTGGCCCTCGCCCAGATGTCCACGTTGGCATCTACGTGCTCGCTTCTCCTGTATACTGCCTGTGTTTATTCCTCCTGGGCACAAAACTAAAAATAAGCCCATGTCCTTGTGATGAAGATGGGAGTGTCCAGCAGGATGCTGTGTCTGTATAACCTTGCAGCCGGAGATCGCCAGTGAGATCTTTCATGAGAGGATAAAGAGGCGGCAGCGGTCAAGAGTCGGAATGGATATCCCGACCTTCGAAGACAAAGGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1938#0 CGGAATGGATATCCCGACCTTCGAAGACAAAGGAAATGTTATAGGAAAAGAGGGTGTGGA 60
consensus_1938#1 ------------------------------------------------------------
consensus_1938#0 GGAAGAGCTGGAGAAGAAGAAAGAAAGAGAAGATGAAAATGAGGATGGAGAAGTGAGAGA 120
consensus_1938#1 ------------------------------------------------------------
consensus_1938#0 AGAAGAAAAAGTTGAATCACCCGGACAGAAGCAGGAAACAGGCTTTTCT-CCGCGCATCG 179
consensus_1938#1 ------------------------TCTCTTCCTTTATTCCTGCTCTTCCGTCGCAGGCTG 36
* * * * *** *** *** *
consensus_1938#0 GTTTCTTCAATAGTCTGCAGAGAGAGG---TGTACTACTATGCCGACGAG-AAGATCGTC 235
consensus_1938#1 GAGATCTCAGGGACCCACGGCTAGGACGCCTGTACGGAAGCAGAAACCAGTAACACTTTT 96
* *** * * * ** ***** ** ** ** * *
consensus_1938#0 ATAGAAGAGGGGCTTGACTCCTTCG-CTGGGATGATATGGGCAGCTGCTCTCGCTCTCTG 294
consensus_1938#1 ATTCATCCTGGCCCTCGCCCAGATGTCCACGTTGGCATCTACG--TGCTCGCTTCTCCTG 154
** * ** * * * * * * * ** ** * ***** * ***
consensus_1938#0 T-CACCACCTGGACTCGCACCGTCAGCAGATCAATCTGGTGGACAAAGGCG-GTCCTGGA 352
consensus_1938#1 TATACTGCCTGTGTTTATTCCTCCTGGGCACAAAACTAA-AAATAAGCCCATGTCCTTGT 213
* ** **** * ** * * * ** ** * ** * ***** *
consensus_1938#0 GCTCGGGGCAGGAACGGGCCTCGGGTCTGTCGTTGCGGCGCTCCTGGGCGCCTGGGTGAC 412
consensus_1938#1 GATGAAGATGGGAGTGTCCAGCAGGA-TGCTGTGTCTGTATAACCTTGCAGCCGGAGATC 272
* * * *** * * * ** ** ** * * * ** * ** *
consensus_1938#0 GGCCAC-AGACCTCCCAGTGGTCCTGAACAACCTGACGGCCAATGTGTCAAGAAACACCA 471
consensus_1938#1 GCCAGTGAGATCTTTCATGAGA---GGATAAAGAGGCGGC-AGCG-GTCAAGAGTCGGAA 327
* * *** ** ** * * * ** * **** * * ******* * *
consensus_1938#0 GGGGGCGCTGCAGACACACACCCCAGGTAGCAGCTCTGGTTTGGGGTCACGACCTGGAGA 531
consensus_1938#1 TGGATATCCCGACCTTCGAAGACAAAGGAA------------------------------ 357
** * * * * * * * *
consensus_1938#0 CCACCTACCCCACATCCGTGTATCGCTACGACTACGTCCTGGCCGCTGACGTGGTCTACC 591
consensus_1938#1 ------------------------------------------------------------
consensus_1938#0 ACCACGACTTCCTGAACGAACTCCTGGACACCATGAAGGACTTCTGCAGACCAGG 646
consensus_1938#1 -------------------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |