These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1961#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 467 fasta sequence [CTGCCTCGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGATGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAGCACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGCTGCTTCTGAATGTCCTTTTAATAAAATTCAATTAAAACTCTCNAAAA] [+] EMBL CA844465 [CTGCCTCGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGATGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAGCACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGCTGCTTCTGAATGTCCTTTTAATAAAAT ] [+] EMBL CA846438 [ TGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCTTGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGATGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAGCACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGCTGCTTCTGAATGTCCTTTTAATAAAATTCAATTAAAAC ] [+] EMBL CA845768 [ AGATGACCCAAACATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGTGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGATGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGGCTGCAGCACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGAGCTGCTTCTGAATGTCC TTCAATAAAATTCAATTAAAACTCTCNAAAA] consensusID : consensus_1961#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [CGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGCTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGGTGAGTGTCCTTCTGAAGACCAGCAGCACTGTGTGGTATCTACAGCCAGATGCTTCATCAACTGGCTCGTTCAAAAGTCAGTGCGAGACTAAGTCAACACTTGGCATCGTT] [+] EMBL FR0058437 [CGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCGAGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGCTCCGACATGAGGTCCTGGATTAGGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACTGCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGTCCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGGTGAGTGTCCTTCTGAAGACCAGCAGCACTGTGTGGTATCTACAGCCAGATGCTTCATCAACTGGCTCGTTCAAAAGTCAGTGCGAGACTAAGTCAACACTTGGCATCGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1961#0 CTGCCTCGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCG 60 consensus_1961#1 ------CGACCATGTGGCCGTTGGATCGGATCCTCCACGCAGACCTTGGCTTTATACCCG 54 ****************************************************** consensus_1961#0 AGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGTTCCGACATGAGGTCCTGGATTA 120 consensus_1961#1 AGCTTGAGACCAGATGACCCAAAGATCTGCTGCCCTGCTCCGACATGAGGTCCTGGATTA 114 ************************************* ********************** consensus_1961#0 GGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACT 180 consensus_1961#1 GGCCTGGGAACACTTCAGTTAAGGAAGGATGCAGAGTAACCCTGGAAGGGAGCCAAAACT 174 ************************************************************ consensus_1961#0 GCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGT 240 consensus_1961#1 GCGGGCCCTGAAAGGGTGAGGAACAGAACCGAGAGTTGGTTCAGATCCCAGAGGTGACGT 234 ************************************************************ consensus_1961#0 CCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGA 300 consensus_1961#1 CCTCAACGGCTCCTGAGCATCCGTAATGTGAAGGTGGAGCTGTGGCGGTCGGCGCTGAGG 294 *********************************************************** consensus_1961#0 TGCTGAGTGGATCAAGATTTTAACGTCTGAATCATCTTAAAGGGTTAATTGGGTCTGCAG 360 consensus_1961#1 TG---AGTGTCCT----TCTGAAGACCAGCAGCACTGTG---------TGGTATCTACAG 338 ** **** * * ** * * * ** * * * *** *** consensus_1961#0 C--ACTGCTTCTCCAGCAGGTCTTGATGCAGGATCCAGATAGAAAGTGTGTCCACATTGA 418 consensus_1961#1 CCAGATGCTTCATCAACTGGC--TCGTTCAAAAGTCAGTGCGAGACTAAGTCAACACTTG 396 * ****** ** * ** * * ** * *** ** * * *** *** * consensus_1961#0 GCTGCTTCTGAATGTCCTTTTAATAAAATTCAATTAAAACTCTCNAAAA 467 consensus_1961#1 GCATCGTT----------------------------------------- 404 ** * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |