These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 913 fasta sequence [CTCGGGGACGCAGTGACGTCACCAAACCAGCCGTGCTGCTTAATCGATTGAGCTTCAGGCTGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGCTTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGTGTCTTCATCTCCAGTGTGGTTCTGTTGCTGTCCCAGAAAGCTTTGTTTAAGTTCTACACGCTCTTCTGTGCTGCTCTATTAGGGATGGCAGCGGTGCTCTTCAACTATTATGCCACTTCTCACTCCGATATTTACAGCTACTACTATAATGCGGCACTGGGCTTCCAACTGCTGCCCAAGAATGCTTCGACACTATGGATGGGTATGGCTGTTGTCCAGCTCATTTTTGGTCTTGGCTACATTTTCCTCCTCAATGTCCAGTCACTCTTTGCTGCAGTTGTGGTCCTGGATATTATGATCCCTCTGTGGACACTGATGATTGAGCTACCAGTGGATGTTAGGCAGCTGGTTGCCACATTGTCAGGCCTGTTGCTTGCACTTAATACAGCTGTATGCCTGGCAATGAAGCTTAAATGCTTCTACTATTCC] [+] EMBL CA589232 [CTCGGGGACGCAGTGACGTCACCAAACCAGCCGTGCTGCTTAATCGATTGAGCTTCAGGCTGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGCTTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGTGTCTTCATCTCCAGTGTGGTTCTGTTGCTGTCCCAGAAAGCTTTGTTTAAGTTCTACACGCTCTTCTGTGCTGCTCTATTAGGGATGGCAGCGGTGCTCTTCAACTATTATGCCACTTCTCACTCCGAT ] [+] EMBL CA333078 [ CTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGTGTCTTCATCTCCAGTGTGGTTCTGTTGCTGTCCCAGAAAGCTTTGTTTAAGTTCTACACGCTCTTCTGTGCTGCTCTATTAGGGATGGCAGCGGTGCTCTTCAACTATTATGCCACTTCTCACTCCGATATTTACAGCTACTACTATAATGCGGCACTGGGCTTCCAACTGCTGCCCAAGAATGCTTCGACACTATGGATGGGTATGGCTGTTGTCCAGCTCATTTTTGGTCTTGGCTACATTTTCCTCCTCAATGTCCAGTCACTCTTTGCTGCAGTTGTGGTCCTGGATATTATGATCCCTCTGTGGACACTGATGATTGAGCTACCAGTGGATGTTAGGCAGCTGGTTGCCACATTGTCAGGCCTGTTGCTTGCACTTAATACAGCTGTATGCCTGGCAATGAAGCTTAAATGCTTCTACTATTCC] consensusID : consensus_1988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 497 fasta sequence [TTGAGCTTCAGGCTGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGCTTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGGTCTGCGAGTTCCCTGGAATTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGGATACATGTCAAACTGGGAAGTTCTTTGGGATCTGACAAGTAACCTGATCATCTCTGGTTG] [+] EMBL CA332826 [TTGAGCTTCAGGCTGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGCTTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATATGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTCCCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCACAGGGATACATGTCAAACTGGGAAGTTCTTTGGGATCTGACAAGTAACCTGATCATCTCTGGTTG] [+] EMBL FR0060178 [ GCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAGTCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATAAACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTAACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGTGGTGCTGGACGTGGGTCTGCGAGTTCCCTGGTATTTTATTCTAGACGCCATTTTTAACTCCCACTAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1988#0 CTCGGGGACGCAGTGACGTCACCAAACCAGCCGTGCTGCTTAATCGATTGAGCTTCAGGC 60 consensus_1988#1 -----------------------------------------------TTGAGCTTCAGGC 13 ************* consensus_1988#0 TGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGC 120 consensus_1988#1 TGAGGTGACCAGTCCGACAGCTGATTACCAACACCTGATTACCAACACCTGATGACCTGC 73 ************************************************************ consensus_1988#0 TTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAG 180 consensus_1988#1 TTTCACTGGCAGCACAGTCGAAGGAGAAGCCTAAGGTGGAATTTGGTCGTGGAACGACAG 133 ************************************************************ consensus_1988#0 TCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATA 240 consensus_1988#1 TCAACAGGAGGTCGAGCTGACCAATATGGCGGGCACAAGTGGCGTCCTGGTTATCTAATA 193 ************************************************************ consensus_1988#0 AACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTA 300 consensus_1988#1 AACTAGCGATGGGACTAACTGGAACTGTACTCTTGCAACCCAGGACACTATAGGATTGTA 253 ************************************************************ consensus_1988#0 ACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGT 360 consensus_1988#1 ACCCCCTCGTCAGTGTCATATGGCGACTGCTCAAGCCAGGATCGGCCATCAGGTCTTCGT 313 ************************************************************ consensus_1988#0 GGTGCTGGACGTGGTTCTGCGAGTTCCCTGTATTTTTATTCTAGACGCCATTTTTAACTC 420 consensus_1988#1 GGTGCTGGACGTGGGTCTGCGAGTTCCCTGGAATTTTATTCTAGACGCCATTTTTAACTC 373 ************** *************** * *************************** consensus_1988#0 CCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCAC 480 consensus_1988#1 CCACTATGATGCAGGTTCTGGATGGGCCGGTTCGGTGGCAAAGTTGGCGATCAGAATCAC 433 ************************************************************ consensus_1988#0 AGGTGTCTTCATCTC-CAGTGTGGTTCTGTTGCTGTCCCAGAAAGCTTTGTTTAAGTTCT 539 consensus_1988#1 AGGGATACATGTCAAACTGGGAAGTTCT-TTGGGATCTGACAAGTAACCTGATCATCTCT 492 *** * ** * * * ***** *** ** * ** * * *** consensus_1988#0 ACACGCTCTTCTGTGCTGCTCTATTAGGGATGGCAGCGGTGCTCTTCAACTATTATGCCA 599 consensus_1988#1 GGTTG------------------------------------------------------- 497 * consensus_1988#0 CTTCTCACTCCGATATTTACAGCTACTACTATAATGCGGCACTGGGCTTCCAACTGCTGC 659 consensus_1988#1 ------------------------------------------------------------ consensus_1988#0 CCAAGAATGCTTCGACACTATGGATGGGTATGGCTGTTGTCCAGCTCATTTTTGGTCTTG 719 consensus_1988#1 ------------------------------------------------------------ consensus_1988#0 GCTACATTTTCCTCCTCAATGTCCAGTCACTCTTTGCTGCAGTTGTGGTCCTGGATATTA 779 consensus_1988#1 ------------------------------------------------------------ consensus_1988#0 TGATCCCTCTGTGGACACTGATGATTGAGCTACCAGTGGATGTTAGGCAGCTGGTTGCCA 839 consensus_1988#1 ------------------------------------------------------------ consensus_1988#0 CATTGTCAGGCCTGTTGCTTGCACTTAATACAGCTGTATGCCTGGCAATGAAGCTTAAAT 899 consensus_1988#1 ------------------------------------------------------------ consensus_1988#0 GCTTCTACTATTCC 913 consensus_1988#1 -------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |