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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2003#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 831 fasta sequence
[ACATTGTAAAGAATCGTAAATGTGTTCTGCAAGTAACTTTGTAAACTCGTTGAAGGAGCAAACGGTGGCCAGGCTGTGTTCGGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGCCTGGGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGGAAGGTTTTGCAACGAGGGCGAAGGCCTGTAAGGTGGAAGTTCTAAAGCTGGAGCAGCTTATGGAGCTGGGCAGGCAGAACCTCAAAGATCCTGTGCCGCCCCGGCCTCAGGATCTGGCCGTGGTCTGCTTCACCAGTGGAACCACAGGGAAGCCCAAGGGAGCCATGATCACCCACGGAAACATCGCCTCCAACGCTTCCTCTGTCATTAAGCTCCTGGAGGGATCAGTCGTGATCCAACAGGAG]
[+] EMBL CA846175 [ACATTGTAAAGAATCGTAAATGTGTTCTGCAAGTAACTTTGTACCCTCGTTGAAGGAGCAAACGGTGGCCAGGCTGTGTTCGGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGCC GGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGGAAGGTTTTGCAACGAGGGCGAAGGCCTGTAAGGTGGAAGTTCTAAAGCTGGAGCAGCTTATGGAGCTGGGCAGGCAGAACCTCAAAGATCCTGTGCCGCCCCGGCCTCAGGATCTGGCCGTGGTCTGCTTCACCAGTGGAACCACAGGGAAGCCCAAGGGAGCCATGATCACCCACGGAAACATCGCCTCCAACGCTTCCTCTGTCATTAAGCTCCTGGAGGGATCAGTCGTGATCCAACAGGAG]
[+] EMBL BU805983 [ GTTCTGCAAGTAACTTTGTAAACTCGTTGAAGGAGCAAACGGTGGCCAGGCTGTGTTCGGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGTCTGTGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTT ]
consensusID : consensus_2003#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 799 fasta sequence
[TTCGATGAGCAAACGGTGGCCAGGCTGTGTTCGAGTTATGCATTCCCTGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGCCGGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGGAAGGTTTTGCAACGAGGGCGAAGGCC]
[+] EMBL CA846136 [TTCGATGAGCAAACGGTGGCCAGGCTGTGTTCGAGTTATGCATTCCCTGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCGGGTCAGCCGGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAAAGCCCAGCTTCTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATATTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATGGCCGTGGTTCCTCTGTACGACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCTGGCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGAACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGGAAGGTTTTGCAACGAGGGCGAAGGCC]
consensusID : consensus_2003#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 535 fasta sequence
[TTATGCATTTCCAGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGTAGCTCCAATCATAATAAACCAAGGTTGATTCCTCAGGTGACCCTTACAAACACAACTGACCTTTAACCTTCAAGTACGCTTTAAAGTGGCTGATGAGATTGGGCAGGGTTTATATATATACACACATATATATATATATATATATATACACACATATACATAATGTGTGAGTGTGTGTATCT]
[+] EMBL BU806070 [TTATGCATTTCCAGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAGGTAGCTCCAATCATAATAAACCAAGGTTGATTCCTCAGGTGACCCTTACAAACACAACTGACCTTTAACCTTCAAGTACGCTTTAAAGTGGCTGATGAGATTGGGCAGGGTTTATATATATACACACATATATATATATATATATATATACACACATATACATAATGTGTGAGTGTGTGTATCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2003#0 ------------------------------------------------------------
consensus_2003#1 TTCGATGAGCAAACGGTGGCCAGGCTGTGTTCGAGTTATGCATTCCCTGGACTGGTTCCG 60
consensus_2003#2 ------------------------------------------------------------
consensus_2003#0 ------------------------------------------------------------
consensus_2003#1 TTCACTTCGCACCAGCACTGAACTGGAAGGAGCTGACTCAGAGAACACGTGGAGTCTTTG 120
consensus_2003#2 ------------------------------------------------------------
consensus_2003#0 ------------------------------------------------------------
consensus_2003#1 GCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCGCGGCGCTCCCTGCTGGGTTTAGGAGC 180
consensus_2003#2 ------------------------------------------------------------
consensus_2003#0 -----ACATTGTAAAGAATCGTAAATGTGTTCTGCAAG-TAACTTTGTAAACTCGTTGAA 54
consensus_2003#1 CGTGGCCTCTCTCACTGCGTATTATCTGGTGATGCGGCCTCGCCCCATGCACCCCCCCTG 240
consensus_2003#2 ------------------------------------------------------------
consensus_2003#0 GGAGCAAACGGTGGCCAGGCTGTGTTCG-----GGAGATCCCAGCTGCAGGCGCTCGGCT 109
consensus_2003#1 CGATCT--CCAGGCCCAGTCTGTGCCTGTGAATGGAGATCCCAGCTGCAGGCGCTCGGCT 298
consensus_2003#2 ------------------------------------------------------------
consensus_2003#0 CTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGAC 169
consensus_2003#1 CTCCTCAAAGATGATTCGCTGCTGGACTTTTACTACGAAGATACCAGGACGTACTACGAC 358
consensus_2003#2 --------------------------------------------------------TTAT 4
*
consensus_2003#0 ATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCG 229
consensus_2003#1 ATGTTCCAACGAGGACTGCGGATCGCAGGAGGTGGGCCCTGTCTTGGCTTCAGAAAGCCG 418
consensus_2003#2 GCATTTCCAGGACTGGTTCCGTTCACTTCGCACCAGCACTGAACTGG----AAGGAGCTG 60
** * * ** * * * ** * ** *** *** * *** *
consensus_2003#0 GGTCAGCCTGGGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAA-AGCCCAGCTT 288
consensus_2003#1 GGTCAGCC--GGCCTACGAGTGGATGTCCTACACCGAGGTGGAGCACAA-AGCCCAGCTT 475
consensus_2003#2 ACTCAGAGAACACGTG-GAGTCTTTGGCCCTCGCTGCCGTCGTCTTCCTTGGCGCTATCG 119
**** * * **** ** ** * * * ** * * ** *
consensus_2003#0 CTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATA 348
consensus_2003#1 CTGGGCTCTGGGCTGCTGGCTAAAGGCTGCCAGCCCAACGCACAGCAGTTTGTTGGCATA 535
consensus_2003#2 CGGCGCTCCCTGCTG--GGTTTAGGAGCCGTGGCCTCTCTCACTGCGTATTATC----TG 173
* * **** **** ** * * * *** * *** ** ** * *
consensus_2003#0 TTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATG 408
consensus_2003#1 TTCGCACAGAACCGACCGGAGTGGGTCCTCACCGAGCTGGCCTGCTACACCTACTCCATG 595
consensus_2003#2 GTGATGCGGCCTCGCCCCATGCACCCCCCCTGCGATCTCCAGGCCCAGTCTGTGCCTGTG 233
* * * ** ** * ** * *** ** * * * * **
consensus_2003#0 GCCGTGGTTCCTCTGTAC-GACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCT 467
consensus_2003#1 GCCGTGGTTCCTCTGTAC-GACACGCTGGGCCTGGAAGCCATGGTCCACATACTGAACCT 654
consensus_2003#2 AATGGAGATCCCAGCTGCAGGCGCTCGGCTCTCCTCAAAGATGATTCGC-TGCTGGACTT 292
* * *** * * * * * * * * * *** * * * * *** ** *
consensus_2003#0 G-GCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGA 526
consensus_2003#1 G-GCGGAGATCTCCTTGGTGATTTGTGACAAGGAGGACAAGGCGGCGGCCCTGCTGGAGA 713
consensus_2003#2 TTACTACGAAGATACCAG-GACGTACTACGACATGTTCCAACGAGGACTGCGGATCGCAG 351
* ** * ** * ** * * * * * * * * *
consensus_2003#0 ACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGG 586
consensus_2003#1 ACAAAGAGAACGGCACGACTCCAACACTCTCCTGCCTGGTCCTCTTTAATAACTTCACGG 773
consensus_2003#2 GTAGCTCCAATCATAATAAACCAAGGTTGATTCCTCAGGTGACCCTTACAAACACAACTG 411
* ** * * **** * * *** * *** *** ** *
consensus_2003#0 AAGGTTTTGCAACGAGGGCGAAGGCCTGTAAGGTGGAAGTTCTAAAGCTGGAGCAGCTTA 646
consensus_2003#1 AAGGTTTTGCAACGAGGGCGAAGGCC---------------------------------- 799
consensus_2003#2 ACCTTTAACCTTCAAGTACG-----CTTTAAAGTGGCTGATG-AGATTGGGCAGGGTTTA 465
* ** * * ** ** *
consensus_2003#0 TGGAGCTGGGCAGGCAGAACCTCAAAGATCCTGTGCCGCCCCGGCCTCAGGATCTGGCCG 706
consensus_2003#1 ------------------------------------------------------------
consensus_2003#2 TATATATACACACATATATATATATATATA-TATATACACACATATACATAATGTGTGAG 524
consensus_2003#0 TGGTCTGCTTCACCAGTGGAACCACAGGGAAGCCCAAGGGAGCCATGATCACCCACGGAA 766
consensus_2003#1 ------------------------------------------------------------
consensus_2003#2 TG-TGTGTATCT------------------------------------------------ 535
consensus_2003#0 ACATCGCCTCCAACGCTTCCTCTGTCATTAAGCTCCTGGAGGGATCAGTCGTGATCCAAC 826
consensus_2003#1 ------------------------------------------------------------
consensus_2003#2 ------------------------------------------------------------
consensus_2003#0 AGGAG 831
consensus_2003#1 -----
consensus_2003#2 -----
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |