These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2009#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 984 fasta sequence [TTCGTCTTTTCTGAAGAAAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAGGGATCACTCGTCTTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCTCGAGCCTGCAGACTGCAGTGAGGTCACTGACTTTAGTGACCTCACTGGCAATGTCAGTGAGGTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACGTTGGTTTTCTGTGACATGGCAACTGATAATGGAGGCTGGACTGTGATCACTAGTAGAATGGATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAAGGTTGGTTTCGGTATGCCTACTTCAGAGTACTGGATCGGTCTGGACAACATCTACTACTTGGGCGAGTAGTAAACAATATGAGCTTCTAGTTGTGTTGGAGGACTTTGAAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCGCTGTTGGTGATGAGAGTTCTGGATATCAGCTGACTGTTGGAGACTTTACTGATGGAGGAGCAGGAGACGCAATGACTTATCACAACCAAATGAAGTTCACCACCCTTGGACAGAGACAACGACCTTTTAGACAAGGAAAACTGTGCCAGGAAATACCTGGGAGCCTTCTGGTACAATAAATGTCACACTACAAACCCCAATGGGGTGTATCGCTGGGGCGCCGATGGTACTCTTTTCGCTGTTGGGGTCAGCTGGTATCCTTGGAAGGGTCATGACTACTCACTGAAGTCATTCATCATGATGATCCGTCCTGTCCAGTAGAGCTTTAGGGTCAATGCTCAGCAAAACCTTTTCTTCTTCTCTAAGATAGTCTGTAGCAGAGTGTGTGATTACCTCTTGATTCTCTTCTAGTCACTTCGGCAAAGATTTGAATTGTGATTTCAGATACCTAATGTATCATAACATCAATCAATAAATAATCAATAAATATATTGAGCAAA] [+] EMBL CA589150 [TTCGTCTTTTCTGAAGAAAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAGGGATCACTCGTCTTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCTCGAGCCTGCAGACTGCAGTGAGGTCACTGACTTTAGTGACCTCACTGGCAATGTCAGTGAGGTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACGTTGGTTTTCTGTGACATGGCAACTGATAATGGAGGCTGGACTGTGATCACTAGTAGAATGGATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAAGGTTGGTTTCGGTATGCCTACTTCAGAGTACTGGATCGGTCTCGACAACATCTACTACTT GACGAGTAGTAAACAATATGAGCTTCTAGTTGTGTTGGAGGACTTTGAAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCGCTGTTGGTGATGAGAGTTCTGGATATCAGCTGACTGTTGGAGACTTTACTGATGGAAGAGCAAGAGACGCAATGACTTATCACAACCAAATGAAGTTCACCACCCTTGGACAG ] [-] EMBL CA332389 [ GGTCTGGACACCATTTACTTCTTGGGCGAGTAGTAAACAATATGAGCTTCTAGTTGTGTTGGAGGACTTTGAAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCGCTGTTGGTGATGAGAGTTCTGGATATCAGCTGACTGTTGGAGACTTTACTGATGGAGGAGCAGGAGACGCAATGACTTATCACAACCAAATGAAGTTCACCA CCTTGGACAGAGACAACGACCTTTTAGACAAGGAAAACTGTGCCAGGAAATACCTGGGAGCCTTCTGGTACAATAAATGTCACACTACAAACCCCAATGGGGTGTATCGCTGGGGCGCCGATGGTACTCTTTTCGCTGTTGGGGTCAGCTGGTATCCTTGGAAGGGTCATGACTACTCACTGAAGTCATTCATCATGATGATCCGTCCTGTCCAGTAGAGCTTTAGGGTCAATGCTCAGCAAAACCTTTTCTTCTTCTCTAAGATAGTCTGTAGCAGAGTGTGTGATTACCTCTTGATTCTCTTCTAGTCACTTCGGCAAAGATTTGAATTGTGATTTCAGATACCTAATGTATCATAACATCAATCAATAAATAATCAATAAATATATTGAGCAAA] consensusID : consensus_2009#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [ACCCAGCTTCTTGCAAGTATGATGGACCAGAGAGCTAAATTACATTTGATTTTGATGTTTTGCAGAGAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAGGGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCCCGAGCCTGCAGACTGCAGTGAGGTCACTGACATTGTCAGTGGAATCTACCCCATCTATCCTGCTGGACACGGGTCTGAGATACCAGTTTTCTGTGACATGGAAACTGATAATGGAGGCTGGACTGTGATCACTAGTATAATCTATGGAGAACTCAACTTCTACAGACCCTGGAACCATTACAAGGTTGGTTTCGGTACGCCTGCTTCAGAGTACTGGATCGGTCTCGACAACATCTACTACTTGACGAGTAGTAAACAATATGAGCTTCTAGTGCTGTTGGAGGACTTTGCAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCCCTGGTGGGGATGAAGCTCTGGATATCAACCTGACTGTTGGAGACTTTCCTGATGGAGGACCAGGA] [+] EMBL CA591226 [ACCCAGCTTCTTGCAAGTATGATGGACCAGAGAGCTAAATTACATTTGATTTTGATGTTTTGCAGAGAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAGGGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCCCGAGCCTGCAGACTGCAGTGAGGTCACTGACATTGTCAGTGGAATCTACCCCATCTATCCTGCTGGACACGGGTCTGAGATACCAGTTTTCTGTGACATGGAAACTGATAATGGAGGCTGGACTGTGATCACTAGTATAATCTATGGAGAACTCAACTTCTACAGACCCTGGAACCATTACAAGGTTGGTTTCGGTACGCCTGCTTCAGAGTACTGGATCGGTCTCGACAACATCTACTACTTGACGAGTAGTAAACAATATGAGCTTCTAGTGCTGTTGGAGGACTTTGCAGGCAAAACTGTGTATGCTTACTATGGTTCCTTCCCTGGTGGGGATGAAGCTCTGGATATCAACCTGACTGTTGGAGACTTTCCTGATGGAGGACCAGGA] consensusID : consensus_2009#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 363 fasta sequence [TGCTTTCACCCCAAGTCCCAGCATGACGGGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGGCAGTGGTCAACCAAATCCCGAGCCTGCAGACTGCAGTGAGGTCACTGACATCAGTGACCTCACTGACAATGTCAGTGAGGACAGTGAGCGTTTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACGTTGGTTTTCTGTGACATGGGAACTGATAATGGAGGCTGGACTGTGATCACTAGTACAATGGATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAACGTTGGTTTCGGTATGCCTACTTCAGAGTACTGGATCGGTCTTGACAACATCCT] [+] EMBL FR0055385 [TGCTTTCACCCCAAGTCCCAGCATGACGGGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGGCAGTGGTCAACCAAATCCCGAGCCTGCAGACTGCAGTGAGGTCACTGACATCAGTGACCTCACTGACAATGTCAGTGAGGACAGTGAGCGTTTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACGTTGGTTTTCTGTGACATGGGAACTGATAATGGAGGCTGGACTGTGATCACTAGTACAATGGATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAACGTTGGTTTCGGTATGCCTACTTCAGAGTACTGGATCGGTCTTGACAACATCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2009#0 -------------------------------------------------TTCGTCTTTTC 11 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 ACCCAGCTTCTTGCAAGTATGATGGACCAGAGAGCTAAATTACATTTGATTTTGATGTTT 60 consensus_2009#0 TGAAGAAAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAG 71 consensus_2009#2 --------------------------------TGCTTTCACCCCAAGTCCCAGCATGACG 28 consensus_2009#1 TGCAGAGAATCACACCCCTGAATCTGAAGTTCTGCTTTCACCCCAAGTCCCAGCATGAAG 120 ************************** * consensus_2009#0 GGATCACTCGTCTTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCTC 131 consensus_2009#2 GGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGGCAGTGGTCAACCAAATCCC 88 consensus_2009#1 GGATCACTCGTCCTCCTCTTCCTCATGGCCCCAACACTGGCCAGTGGTCAACCAAATCCC 180 ************ *************************** ***************** * consensus_2009#0 GAGCCTGCAGACTGCAGTGAGGTCACTGACTTTAGTGACCTCACTGGCAATGTCAGTGAG 191 consensus_2009#2 GAGCCTGCAGACTGCAGTGAGGTCACTGACATCAGTGACCTCACTGACAATGTCAGTGAG 148 consensus_2009#1 GAGCCTGCAGACTGCAGTGAGGTCACTGACATTG----------------------T--- 215 ****************************** * * consensus_2009#0 G------------TCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACG 239 consensus_2009#2 GACAGTGAGCGTTTCAGTGGAATGTACCCCATCTATCCTGCTGGACACGGGTCTGAGACG 208 consensus_2009#1 --------------CAGTGGAATCTACCCCATCTATCCTGCTGGACACGGGTCTGAGATA 261 ********* ********************************** consensus_2009#0 TTGGTTTTCTGTGACATGGCAACTGATAATGGAGGCTGGACTGTGATCACTAGTAGAATG 299 consensus_2009#2 TTGGTTTTCTGTGACATGGGAACTGATAATGGAGGCTGGACTGTGATCACTAGTACAATG 268 consensus_2009#1 CCAGTTTTCTGTGACATGGAAACTGATAATGGAGGCTGGACTGTGATCACTAGTATAATC 321 **************** *********************************** *** consensus_2009#0 GATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAAGGTTGGTTTCGGTATGCCT 359 consensus_2009#2 GATGGAGAACTCAACTTCTACAGACCCTGGGACCATTACAACGTTGGTTTCGGTATGCCT 328 consensus_2009#1 TATGGAGAACTCAACTTCTACAGACCCTGGAACCATTACAAGGTTGGTTTCGGTACGCCT 381 ***************************** ********** ************* **** consensus_2009#0 ACTTCAGAGTACTGGATCGGTCTGGACAACATCTACTACTTGGGCGAGTAGTAAACAATA 419 consensus_2009#2 ACTTCAGAGTACTGGATCGGTCTTGACAACATCCT------------------------- 363 consensus_2009#1 GCTTCAGAGTACTGGATCGGTCTCGACAACATCTACTACTTGA-CGAGTAGTAAACAATA 440 ********************** ********* consensus_2009#0 TGAGCTTCTAGTTGTGTTGGAGGACTTTGAAGGCAAAACTGTGTATGCTTACTATGGTTC 479 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 TGAGCTTCTAGTGCTGTTGGAGGACTTTGCAGGCAAAACTGTGTATGCTTACTATGGTTC 500 consensus_2009#0 CTTCGCTGTTGGTGATGAGAGTTCTGGATATCAGCTGACTGTTGGAGACTTTACTGATGG 539 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 CTTCCCTGGTGGGGATGAAGCTCTGGATATCAACCTGACTGTTGGAGACTTTCCTGATGG 560 consensus_2009#0 AGGAGCAGGAGACGCAATGACTTATCACAACCAAATGAAGTTCACCACCCTTGGACAGAG 599 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 AGGACCAGGA-------------------------------------------------- 570 consensus_2009#0 ACAACGACCTTTTAGACAAGGAAAACTGTGCCAGGAAATACCTGGGAGCCTTCTGGTACA 659 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 ------------------------------------------------------------ consensus_2009#0 ATAAATGTCACACTACAAACCCCAATGGGGTGTATCGCTGGGGCGCCGATGGTACTCTTT 719 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 ------------------------------------------------------------ consensus_2009#0 TCGCTGTTGGGGTCAGCTGGTATCCTTGGAAGGGTCATGACTACTCACTGAAGTCATTCA 779 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 ------------------------------------------------------------ consensus_2009#0 TCATGATGATCCGTCCTGTCCAGTAGAGCTTTAGGGTCAATGCTCAGCAAAACCTTTTCT 839 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 ------------------------------------------------------------ consensus_2009#0 TCTTCTCTAAGATAGTCTGTAGCAGAGTGTGTGATTACCTCTTGATTCTCTTCTAGTCAC 899 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 ------------------------------------------------------------ consensus_2009#0 TTCGGCAAAGATTTGAATTGTGATTTCAGATACCTAATGTATCATAACATCAATCAATAA 959 consensus_2009#2 ------------------------------------------------------------ consensus_2009#1 ------------------------------------------------------------ consensus_2009#0 ATAATCAATAAATATATTGAGCAAA 984 consensus_2009#2 ------------------------- consensus_2009#1 ------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |