These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2013#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 834 fasta sequence [AGGGTGTATTTTTTTTATATTTTGTAAACAGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTCAGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGGGGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCATGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACATCACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAATTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTTCCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAGAACTCGACGCTCAGTTAGATGCCTACAATGCA] [+] EMBL FR0058134 [AGGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGT ] [+] EMBL FR0062322 [ AGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGGTTGACAATGGCTTCAGTG ] [+] EMBL CA845360 [ CCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACATGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGGAAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTCAGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGGGGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCATGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACATCACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAATTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTTCCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAGAACTCGACGCTCAGTTAGATGCCTACAATGCA] consensusID : consensus_2013#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence [CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAAACGGAAAAGCCTTCGGCAAACCTGAAAGTGCCTGGGTTTCATCATTCTGTTCTCAGCTAGGCTTGCTAGCTAACCACCTAACCAGTGAGCTAGTCAAGCAAATAAAATGATTGCTATA] [+] EMBL CA591525 [CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTTTGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAGACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAGGCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGATTTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTAGAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAAACGGAAAAGCCTTCGGCAAACCTGAAAGTGCCTGGGTTTCATCATTCTGTTCTCAGCTAGGCTTGCTAGCTAACCACCTAACCAGTGAGCTAGTCAAGCAAATAAAATGATTGCTATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2013#0 --------------------------------------AGGGTGTATTTTTTTTATATTT 22 consensus_2013#1 CAAGGAGCGCTGTTCTGTGTCAGGGACCAATCAAGGCCATGGTGTATTTTTTTTATATTT 60 * ******************** consensus_2013#0 TGTAAACAGGGGAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAG 82 consensus_2013#1 TGTAAACAGTTTAGCACTATTTGGCCAGCAAAATGACAGATAAACTGGATATGTCCTTAG 120 ********* ************************************************ consensus_2013#0 ACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAG 142 consensus_2013#1 ACGACATTATCAAGCAGAACAGGCAGCAGAGAGGTGGAGGCCGGGGAGGAAGAGGCCGAG 180 ************************************************************ consensus_2013#0 GCCGCGGCATCTCAGGCCGCGGCGGAGGAGTTGGGCGTCTCGGAGGTGGCGGCGGAGGAT 202 consensus_2013#1 GCCGCGGCATCTCAGGCCGCGGCGGAGGTGTTGGGCGTCTCGGAGGTGGCGACGGAGGAT 240 **************************** ********************** ******** consensus_2013#0 TTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTA 262 consensus_2013#1 TTGGAAACCGAGGCGGCGGATCCGGCCCCATGAGGAACCGACAAAACCTGAACCGCGGTA 300 ************************************************************ consensus_2013#0 GAGGCAGACCGACGCCTTACAGCAGGCCCAAACAGCTTCCCGACAAATGGCAGCACGACA 322 consensus_2013#1 GAGGCAGACCGACGCCTTACAGCAGGGTATGAGAAAATTAAAGGAATGGGCAGGAAAA-- 358 ************************** * * * ** ***** * * consensus_2013#0 TGTTTGACAATGGCTTCAGTGGATTCAACGGCGTTGCCAGTGGCGGAGGAGCCGGTGTGG 382 consensus_2013#1 ---ACGGAAAAGCCTTCGGCAAACCTGAAAG---TGCCTGGGTTTCATCATTCTGT-TCT 411 * ** * **** * * * * **** * * * * * ** * consensus_2013#0 AAACTGGAGGGAAGCTCCTCGTCTCCAATCTAGACTTCGGCGTCTCGGATGCAGATATTC 442 consensus_2013#1 CAGCTAGGC-----TTGCTAGCTAACCACCTA-ACCAGTGAGCTAGTCAAGCAAATA--- 462 * ** * * ** * * * *** ** * * * *** *** consensus_2013#0 AGGAACTCTTTGCTGAATTTGGAATTCTAAAAAAGGCCGCTGTTCACTACGATCGGTCGG 502 consensus_2013#1 ---AAATGATTGCTATA------------------------------------------- 476 ** * ***** * consensus_2013#0 GGAGAAGCCTCGGAACAGCAGATGTTCACTTTGAAAGGAGAGCAGATGCCCTCAAGGCCA 562 consensus_2013#1 ------------------------------------------------------------ consensus_2013#0 TGAAACAGTACAACGGCATCCCACTTGATGGGCGGCCTATGAACATACAGCTCGTCACAT 622 consensus_2013#1 ------------------------------------------------------------ consensus_2013#0 CACAGATCGACACACAGCGGCGACCCATGCAGGGTAGAGGCGGTGGAACCATGAACAGAA 682 consensus_2013#1 ------------------------------------------------------------ consensus_2013#0 TTCGTGGAGGCGGCTTTGGGGGCATGCAGAAAACCCGTGGGATGCGCGGCGCCGGCGGTT 742 consensus_2013#1 ------------------------------------------------------------ consensus_2013#0 CCAGGGGAAGGGGTCGAGGTGGTCGAGGAGGGGGCAGCAAACAGCCGCTTTCAGCAGAAG 802 consensus_2013#1 ------------------------------------------------------------ consensus_2013#0 AACTCGACGCTCAGTTAGATGCCTACAATGCA 834 consensus_2013#1 -------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |