These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2014#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 630 fasta sequence [TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGCAAGCATATGAAAGTGGTCTTCTTTGGGAGG] [+] EMBL CA332941 [TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGCAAGCATATGAAAGTGGTCTTCTTTGGGAGG] [+] EMBL BU807566 [ GGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCGTCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTCTGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCATGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACTGCAAAGAAGAAAATCAACGGGATCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCCTCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAGGTTCAGGAGGTCTGTGGCTACCTG ] [+] EMBL FR0060431 [ gTTTGGACGTCGTTTGTGATTCTCACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGAATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCG ] consensusID : consensus_2014#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 284 fasta sequence [CCTTTGCCAAATGCCTTAGTCGCCGAGGGTTGGATGAAAGGCACACTTTATCTGTGTCGCACTCCGGAATTTTTAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGG] [+] EMBL FR0062497 [CCTTTGCCAAATGCCTTAGTCGCCGAGGGTTGGATGAAAGGCACACTTTATCTGTGTCGCACTCCGGAATTTTTAAATTTAATGACATTCGCCATCGCTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCAGTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGACCCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGAAAGAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2014#0 TACCTGGTAAGGTCGGTGCTGTTGACGCGAGCGGGTCCTTTCCAGCCCAGAGTCGGTCCG 60 consensus_2014#1 ------------------------------------------------------------ consensus_2014#0 TCCAAACTTGGACTATTAAATCCAAGGTCAATAATAGATTTTGGACGTCGTTTGTGATTC 120 consensus_2014#1 ------------CCTTTG---CCAAATGCCTTAGTCG---CCGAGGGTTGGATGAAAGGC 42 * ** **** * ** * * * ** * ** * * consensus_2014#0 TGACCGAGTCTATGCGATCGGAATTACGGCTGAAATCAAATTTAATGACATTCGCCATCG 180 consensus_2014#1 ACACTTTATCTGTG---TCGCACTCCGGAATT--TTTAAATTTAATGACATTCGCCATCG 97 ** *** ** *** * * * * * *********************** consensus_2014#0 CTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCA 240 consensus_2014#1 CTTGAACTCCGTGACGCCCCCTTAGCTTAGCATAGTTAGCAGCATAGCAAGGTTGGATCA 157 ************************************************************ consensus_2014#0 GTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGAC 300 consensus_2014#1 GTCGGTTCAGGTATTTCTACACCCGATCAAGATGCAAAAGGATCATTTGTGAGGAAAGAC 217 ************************************************************ consensus_2014#0 CCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGA 360 consensus_2014#1 CCCCATTCACGTGCCATGTCTCTGGTGTTCTCTCGACCCAATACCAACGCACTCCACGGA 277 ************************************************************ consensus_2014#0 AAGAAGGATAAGAGACTGATGGCGGAGGTGAACGCGTCGCCACTCAAGCATTTCGTCACT 420 consensus_2014#1 AAGAAGG----------------------------------------------------- 284 ******* consensus_2014#0 GCAAAGAAGAAAATCAACGGGGTCTTTGAACAGCTGAGCGGCTACATCAAGGAGAGCGCC 480 consensus_2014#1 ------------------------------------------------------------ consensus_2014#0 TCCTTCCTGGAAGATACTCACAAGAATGACGAGCTGGACCCGGTCACCACAGAGGAGCAG 540 consensus_2014#1 ------------------------------------------------------------ consensus_2014#0 GTTCAGGAGGTCTGTGGCTACCTGGCCAAGGTTGCTGGGATCGGAGAGGTTCTGGCCCGC 600 consensus_2014#1 ------------------------------------------------------------ consensus_2014#0 AAGCATATGAAAGTGGTCTTCTTTGGGAGG 630 consensus_2014#1 ------------------------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |