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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2030#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 807 fasta sequence
[CCTGCTAGATATTAATGTGGCCTTTTCACCGCTGTTTGTCTTAGACACTGCGC-AAAAAAGGAGTGAAAATAACCAGAAGTGTCGGACGGAGATATGTGTAAGTCAGCGTTGTTGGTCCTGCTCGGGGTGAGTCTCGGGCTGGTAAAGTCGTTTCCCTCCCAGGAGCCGGACGGTGGAAAACACTGGGTGGTGATCGTAGCCGGGTCCAGTAGCTGGTATAACTACAGGCACCAGGCTGATGCATGTCATGCGTACCAGATTGTCCACAAGAATGGGATCCCAGATGAACAGATTGTGGTTATGATGTACGATGACTTGGCACAGAATGATATGAACCCCACCCCTGGGATACTGATAAACAGGCCAAACGGCTCTGATGTGTATAGAGGTGTTCCCAAAGACTACACTGGAGATAATGTGACCCCGCAAAAGTTCCTGGCAGTGCTGAAGGGTGATAAAGCGAAAGCCAAAGGAAAAGTGATCAACAGCGGCCCCAACGATCACGTGTTTGTGTACTTCACTGACCACGGTGCACCTGGTATTCTGGCATTTCCCAATGATGATCTTGCAGTTAAAGACCTCCAAGACACCATTCAGTACATGCACAAGAATAAAAAATATAAAAGGATGGTGTTCTACATTGAGGCCTGTGAATCCGGGTCAATGATGGAAAACTTGCCCAGTGACATCGATGTGTACGCCACCACCGCAGCCAACTCCCACGAGTCGTCTTATGCCTGTTATTACGACGAAAAGAGAGACACATACCTGNGAGACTGGTACAGCGTCAACTGGATGGAGGACTCT]
[+] EMBL CA591460 [CTTGCTAGATATTAATGTGGCCTTTTCACCGCTGTTTGTCTTATACACTGCGC AAAAAAGGAGTGAAAATAACCAGAAGTGTCGGACGGAGATATGTGTAAGTCAGCGTTGTTGGTCCTGCTCGGGGTGAGTCTCGGGCTGGTAAAGTCGTTTCCCTCCCAGGAGCCGGACGGTGGAAAACACTGGGTGGTGATCGTAGCCGGGTCCAGTAGCTGGTATAACTACAGGCACCAGGCTGATGCATGTCATGCGTACCAGATTGTCCACAAGAATGGGATCCCAGATGAACAGATTGTGGTTATGATGTACGATGACTTGGCACAGAATGATATGAACCCCACCCCTGGGATACTGATAAACAGGCCAAACGGCTCTGATGTGTATAGAGGTGTTCCCAAAGACTACACTGGAGATAATGTGACCCCGCAAAAGTTCCTGGCAGTGCTGAAGGGTGATAAAGCGAAAGCCAAAGGAAAAGTGATCAACAGCGGCCCCAACGATCACGTGTTTGTGTACTTCACTGACCACGGTGCACCTGGTATTCTGGCATTTCCCAATGATGATCTTGCAGTTAAAGACCTCCAAGACACCATTCAGTACATGCACAAGAATAAAAAATATAAAAGGATGGTGTTCTACATTGAGGCCTGTGAATCCGGGTCAATGATGGAAAACTTGCCCAGTGACATCGATGTGTACGCCACCACCGCAGCCAACTCCCACGAGTCGTCTTATGCCTGTTATTACGACGAAAAGAGAGACACATACCTGNGAGACTGGTACAGCGTCAACTGGATGGAGGACTCT]
[+] EMBL BU808391 [ CTGCTAGATATTAATGTGGCCTTTTCACCGCTGTTTGTCTTAGACACTGCGCAAAAAAAGGAGTGAAAATAACCAGAAGTGTCGGACGGAGATATGTGTAAGTCAGCGTTGTTGGTCCTGCTCGGGGTGAGTCTCGGGCTGGTAAAGTCGTTTCCCTCCCAGGAGCCGGACGGTGGAAAACACTGGGTGGTGATCGTAGCCGGGTCCAGTAGCTGGTATAACTACAGGCACCAGGCTGATGCATGTCATGCGTACCAGATTGTCCACAAGAATGGGATCCCAGATGAACAGATTGTGGTTATGATGTACGATGACTTGGCACAGAATGATATGAACCCCACCCCTGGGATACTGATAAACAGGCCAAACGGCTCTGATGTGTATAGAGGTGTTCCCAAAGACTACACTGGAGATAATGTGACCCCGCAAAAGTTCCTGGCAGTGCTGAAGGGTGATAAAGC ]
[+] EMBL CA590166 [ CTGTTTGTCTTAGACACTGCGC AAAAAAGAAGTGAAAATAACCAGAAGTGTCGGACGGAGATATGTGTAAGTCAGCGTTGTTGGTCCTGCTCGGGGTGAGTCTCGGGCTGGTAAAGTCGTTTCCCTCCCAGGAGCCGGACGGTGGAAAACACTGGGTGGTGATCGTAGCCGGGTCCAATAGCTGGTATAACTACAGGCACCAGGCTGATGCATGTCATGCGTACCAGATTGTCCACAAGAATGGGATCCCAGATGAACAGATTGTGGTTATGATGTACGATGACTTGGCACAGAATGATATGAACCCCACCCCTGGGATACTGATAAACAGGCCAAACGGCTCTGATGTGTATAGAGGTGTTCCCAAAGACTACACTGGAGATAATGTGACCCCGCAAAAGTTCCTGGCAGTGCTGAAGGGTGATAAAGCGAAAGCCAAAGGAAAAGTGATCAACAGCGGCCCCAACGATCACGTGTTTGTGTACTTCACTGACCACGGTGCACCTGGTATTCTGGCATTTCCCAATGATGATCTTGCAGTTAAAGACCTCCAAGACACCATTCAGTACATGCAC ]
consensusID : consensus_2030#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence
[ATAAACTTTGACTCCTGCTAGATATTAATGTGGCCTTTTCACCGCTGTTTGTCTTAGACACTGCGCAAAAAAGAAGGTAAATACGTATTTAATTTGTTGTTGAAAGGGTTTTGGTTATACTTCGAAAATCCTGTGATATTCTTTTTCGTCGTAAGCTACCAATTCCTGACAACGTCCATTATCATGTGACGAGCCAGGTGGTCATGTGGTCTATTTTTGTTTAGCAGTCGTTTGCTTTCTTTTCAACAGTGAAAATAACCAGAAGTGTCGGACGGAGATATGTGTAAGTCAGCGTTGTTGGTCCTGCTCGGGGTGAGTCTCGGGCTGGTAAAGTCGTTTCCCTCCCAGGAGCCGGACGGTGGAAAACACTGGGTGGTGATCGTAGCCGGGTCCAATAGCTGGTATAACTACAGGCACCAGGCTGATGCATGTCATGCGTACCAGATTGTCCACAAGAATGGGATCCCAGATGAACAGATTGTGGTTATGATGTACGATGACTTGGCACAGAATGATATGAACCCCACCCCTGGGATACTGATAAACAGGCCAAACGGCTCTGATGTGTATAGAGGTGTTCCC]
[+] EMBL BU806040 [ATAAACTTTGACTCCTGCTAGATATTAATGTGGCCTTTTCACCGCTGTTTGTCTTAGACACTGCGCAAAAAAGAAGGTAAATACGTATTTAATTTGTTGTTGAAAGGGTTTTGGTTATACTTCGAAAATCCTGTGATATTCTTTTTCGTCGTAAGCTACCAATTCCTGACAACGTCCATTATCATGTGACGAGCCAGGTGGTCATGTGGTCTATTTTTGTTTAGCAGTCGTTTGCTTTCTTTTCAACAGTGAAAATAACCAGAAGTGTCGGACGGAGATATGTGTAAGTCAGCGTTGTTGGTCCTGCTCGGGGTGAGTCTCGGGCTGGTAAAGTCGTTTCCCTCCCAGGAGCCGGACGGTGGAAAACACTGGGTGGTGATCGTAGCCGGGTCCAATAGCTGGTATAACTACAGGCACCAGGCTGATGCATGTCATGCGTACCAGATTGTCCACAAGAATGGGATCCCAGATGAACAGATTGTGGTTATGATGTACGATGACTTGGCACAGAATGATATGAACCCCACCCCTGGGATACTGATAAACAGGCCAAACGGCTCTGATGTGTATAGAGGTGTTCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2030#0 ------------------------------------------------------------
consensus_2030#1 ATAAACTTTGACTCCTGCTAGATATTAATGTGGCCTTTTCACCGCTGTTTGTCTTAGACA 60
consensus_2030#0 ------------------------------------------------------------
consensus_2030#1 CTGCGCAAAAAAGAAGGTAAATACGTATTTAATTTGTTGTTGAAAGGGTTTTGGTTATAC 120
consensus_2030#0 ------------------------------------------------------------
consensus_2030#1 TTCGAAAATCCTGTGATATTCTTTTTCGTCGTAAGCTACCAATTCCTGACAACGTCCATT 180
consensus_2030#0 ---------CCTGCTAGATATTAATGTGGCCTTTTCACCGCTGTTTGTCTTAGACACTGC 51
consensus_2030#1 ATCATGTGACGAGCCAGGTGGTCATGTGGTCTATTTTTGTTTAGCAGTCGTTTGCTTTCT 240
* ** ** * * ****** ** ** * *** * * *
consensus_2030#0 GCAAAAAAGGAGTGAAAATAACCAGAAGTGTCGGACGGAGATATGTGTAAGTCAGCGTTG 111
consensus_2030#1 TTTCAACA---GTGAAAATAACCAGAAGTGTCGGACGGAGATATGTGTAAGTCAGCGTTG 297
** * *************************************************
consensus_2030#0 TTGGTCCTGCTCGGGGTGAGTCTCGGGCTGGTAAAGTCGTTTCCCTCCCAGGAGCCGGAC 171
consensus_2030#1 TTGGTCCTGCTCGGGGTGAGTCTCGGGCTGGTAAAGTCGTTTCCCTCCCAGGAGCCGGAC 357
************************************************************
consensus_2030#0 GGTGGAAAACACTGGGTGGTGATCGTAGCCGGGTCCAGTAGCTGGTATAACTACAGGCAC 231
consensus_2030#1 GGTGGAAAACACTGGGTGGTGATCGTAGCCGGGTCCAATAGCTGGTATAACTACAGGCAC 417
************************************* **********************
consensus_2030#0 CAGGCTGATGCATGTCATGCGTACCAGATTGTCCACAAGAATGGGATCCCAGATGAACAG 291
consensus_2030#1 CAGGCTGATGCATGTCATGCGTACCAGATTGTCCACAAGAATGGGATCCCAGATGAACAG 477
************************************************************
consensus_2030#0 ATTGTGGTTATGATGTACGATGACTTGGCACAGAATGATATGAACCCCACCCCTGGGATA 351
consensus_2030#1 ATTGTGGTTATGATGTACGATGACTTGGCACAGAATGATATGAACCCCACCCCTGGGATA 537
************************************************************
consensus_2030#0 CTGATAAACAGGCCAAACGGCTCTGATGTGTATAGAGGTGTTCCCAAAGACTACACTGGA 411
consensus_2030#1 CTGATAAACAGGCCAAACGGCTCTGATGTGTATAGAGGTGTTCCC--------------- 582
*********************************************
consensus_2030#0 GATAATGTGACCCCGCAAAAGTTCCTGGCAGTGCTGAAGGGTGATAAAGCGAAAGCCAAA 471
consensus_2030#1 ------------------------------------------------------------
consensus_2030#0 GGAAAAGTGATCAACAGCGGCCCCAACGATCACGTGTTTGTGTACTTCACTGACCACGGT 531
consensus_2030#1 ------------------------------------------------------------
consensus_2030#0 GCACCTGGTATTCTGGCATTTCCCAATGATGATCTTGCAGTTAAAGACCTCCAAGACACC 591
consensus_2030#1 ------------------------------------------------------------
consensus_2030#0 ATTCAGTACATGCACAAGAATAAAAAATATAAAAGGATGGTGTTCTACATTGAGGCCTGT 651
consensus_2030#1 ------------------------------------------------------------
consensus_2030#0 GAATCCGGGTCAATGATGGAAAACTTGCCCAGTGACATCGATGTGTACGCCACCACCGCA 711
consensus_2030#1 ------------------------------------------------------------
consensus_2030#0 GCCAACTCCCACGAGTCGTCTTATGCCTGTTATTACGACGAAAAGAGAGACACATACCTG 771
consensus_2030#1 ------------------------------------------------------------
consensus_2030#0 NGAGACTGGTACAGCGTCAACTGGATGGAGGACTCT 807
consensus_2030#1 ------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |