These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2033#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 485 fasta sequence [TGGTTTTGGTTTGAATGAGTGGGGGAGGGGGTGTAGCTTATCTGGAACCTTTGGGCGTAGCACTGTCCAGCTCTGGCTTTTAGCTCCTGTGTGAATTTGAGTTTTTTCCTCCCAACAGCTGGAATAGTGGTCTTCACCTAACAAAAGCCCCCCACCCCTCCCAGCATGTCAAGAAAATTTAGCAATTTTGTCTCCTGATATCTGAAACAAAAGTGATTTCCCCACCTGGCTGTCTCTGAGGTTGGAGGGGCAGTTAACACTCAAGCTTCTGATCCACCGGGGGTAGTAGTGTCCAACGTGCCCCGAATCCCCCTTCCAAACAAAGTGTTCCATCTTTTCAGAGGTGTTTTGCGTAGTGGTGTGGGCCTCCAACATGTGGGAGGCAGTTTGTAGTGAGGCGTGTTT-CTCTCGAGGGACTCCATCAGGTTGGGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGCCTTTGTCACCTGACTGGAAAT] [-] EMBL CA332346 [TGGTTTTGGTTTGAATGAGTGGGGGAGGGGGTGTAGCTTATCTGGAACCTTTGGGCGTAGCACTGTCCAGCTCTGGCTTTTAGCTCCTGTGTGAATTTGAGTTTTTTCCTCCCAACAGCTGGAATAGTGGTCTTCACCTAACAAAAGCCCCCCACCCCTCCCAGCATGTCAAGAAAATTTAGCAATTTTGTCTCCTGATATCTGAAACAAAAGTGATTTCCCCACCTGGCTGTCTCTGAGGTTGGAGGGGCAGTTAACACTCAAGCTTCTGATCCACCGGGGGTAGTAGTGTCCAACGTGCCCCGAATCCCCCTTCCAAACAAAGTGTTCCATCTTTTCAGAGGTGTTTTGCGTAGTGGTGTGGGCCTCCAACATGTGGGAGGCAGTTTGTAGTGAGGCGTGTTT CTCTCGAGGGACTCCATCAGGTTGGGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGCCTTTGTCACCTGACTGGAAA ] [+] EMBL FR0056063 [ ATTTCCCCACCTGGCTGTCTCTGAGGTTGGAGGGGCAGTTAACACTCAAGCTTCTGATCCACCGGGGGTAGTAGTGTCCAACGTGCCCCGAATCCCCCTTCCAAACAAAGTGTTCCATCTTTTCAGAGGTGTTTTGCGTAGTGGTGTGGGCCTCCAACATGTGGGAGGCAGTTTGTAGTGAGGCGTGTTTCCTCTCGAGGGACTCCATCAGGTTGTGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGC ] [+] EMBL CA340997 [ GTAGTGAGGCGTGTTT CTCTCGATGGACTCCATCAGGTTGGGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGCCTTTGTCACCTGACTGGAAAT] consensusID : consensus_2033#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [TAAAAGTGTTTATTTCTTGTTCTCTACCAGAAGGTTTAGAACCACCACATAAATGGAACACACCCAAAACATTATGAAGGTTAATAATTATACAATGTCAAACAGCCAACGTGCTCTGCAATGAAGGGCTGGGGAAAACATCAGTTTCAGAAAACCCTGAAGCTGCCAAAAGAATTTGAAAGATTTAATGATCATTTTCTCACAAATACACCAGATAGCAAAACGGGTTTTTTTTTTTTTAAATCATGCATTTATCAACTTTGAGGAAAAAAAACTCATTTGCATTTACTAATAAAAGATACATTAGACATCAGACAGCGCGTGTGATTGTTGTCAATTCCGTTTTATTTTATATTTTTTTTGCCATTTCCAGTCAGGTGACAAAGGCCTCGAGTGAAGTTTGCAGCTCTACCACCCTCCCCAAC] [+] EMBL CA331600 [TAAAAGTGTTTATTTCTTGTTCTCTACCAGAAGGTTTAGAACCACCACATAAATGGAACACACCCAAAACATTATGAAGGTTAATAATTATACAATGTCAAACAGCCAACGTGCTCTGCAATGAAGGGCTGGGGAAAACATCAGTTTCAGAAAACCCTGAAGCTGCCAAAAGAATTTGAAAGATTTAATGATCATTTTCTCACAAATACACCAGATAGCAAAACGGGTTTTTTTTTTTTTAAATCATGCATTTATCAACTTTGAGGAAAAAAAACTCATTTGCATTTACTAATAAAAGATACATTAGACATCAGACAGCGCGTGTGATTGTTGTCAATTCCGTTTTATTTTATATTTTTTTTGCCATTTCCAGTCAGGTGACAAAGGCCTCGAGTGAAGTTTGCAGCTCTACCACCCTCCCCAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2033#0 TGGTTTTGGTTTGAATGAGTGGGGGAGGGGGTGTAGCTTATCTGGAACCTTTGGGCGTAG 60 consensus_2033#1 -----------------------------------------TAAAAGTGTTTATTTCTTG 19 * *** * * consensus_2033#0 CACTGT-CCAGCTCTGGCTTTTAGCTCCTGTGTGAATTTGAGTTTTTTCCTCCCAACAGC 119 consensus_2033#1 TTCTCTACCAGA--AGGTTTAGAACCACCACATAAATGGAA----CACACCCAAAACATT 73 ** * **** ** ** * * * * *** * * * **** consensus_2033#0 TGGAATAGTGGTCTTCACCTAACAAAAGCCCCCCACCCCTCCCAGCATGTCAAGAAAATT 179 consensus_2033#1 ATGAAGGTTAATAATTATACAATGTCAAACAGCCAACGTGCTCTGCA----ATGAAGGGC 129 *** * * * * ** * * *** * * * *** * *** consensus_2033#0 TAGCAATTTTGTCTCCTGATATCTGAAACAAAAGTGATTTCCCCACCTGGCTGTCTCTGA 239 consensus_2033#1 TGGGGAAAACATCA------GTTTCAGAAAACCCTGAAGCTGCCAAAAGA--ATTTGAAA 181 * * * ** * * * * ** *** *** * * * * consensus_2033#0 GGTTGGAGGGGCAGTTAA-CACTCAAGCTTCTGATCC---ACCGGGGGTAGTAGTGTCCA 295 consensus_2033#1 GATTTAATGATCATTTTCTCACAAATACACCAGATAGCAAAACGGGTTTTTTTTTTTTTA 241 * ** * * ** ** *** * * * *** * **** * * * * * consensus_2033#0 ACGTGCCCCGAATCCCCCTTCCAAACAAAGTGTTCCATCTTTTCAGAGGTGTTTTGCGTA 355 consensus_2033#1 AATCATGCATTTATCAACTTTGAGGAAAAAAAACTCATTTGCATTTAC---TAATAAAAG 298 * * * *** * *** *** * * * * consensus_2033#0 GTGGTGTGGGCCTCCAACA-TGTGGGAGGCAGTTTGTAGTGAGGCGTGTTTCTCTCGAGG 414 consensus_2033#1 ATACATTAGACATCAGACAGCGCGTGTGATTGTTGTCAATTC--CGTTTTATTTTATATT 356 * * * * ** *** * * * * *** * * *** ** * * * consensus_2033#0 GACTCCATCAGGTTGGGGAGGGTGGTAGAGCTGCAAACTTCACTCGAGGCCTTTGTCACC 474 consensus_2033#1 TTTTTTGCCATTTCCAGTCAGGTGACAAAGGCCTCGAGTGAAGTTTGCAGCTCTACCACC 416 * ** * * **** * ** * * * * ** * **** consensus_2033#0 TGACTGGAAAT 485 consensus_2033#1 CTCCCCAAC-- 425 * * |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |