These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 618 fasta sequence [CTACTTCTTTATTGGCTTTTGTGGGGGTCTGCTCTTTGTTTGCCCGCAGCTAAATTTCCAGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCGTGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTCCATAATAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCGACTTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCTTCTCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCGACCGCATCGCCACCATCGAACACGAGTTCCTCCACGCTCTGGGTTTCTGGCACGAGCAGTCGAGAGCCGATCGGGACGATTACGTCAAAATCATGTGGGACCGCATCACAGAGGATAAACAGCACAACTTCAACACCTACAACGACACCACCTCCAGCTCCCTGGGAGTACCGTACGACTATGGCTCCATGATGCACTAC] [+] EMBL CA845004 [CTACTTCTTTATTGGCTTTTGTGTGGTTCTGCTCTTTGTTTGCCCGCAGCTAAATTTCCAGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCGTGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTCCATAATAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCGACTTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCTTCTCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCGACCGCATCGCCACCATCGAACACGAGTTCCTCCACGCTCTGGGTTTCTGGCACGAGCAGTCGAGAGCCGATCGGGACGATTACGTCAAAATCATGTGGGACCGCATCACAGAGGATAAACAGCACAACTTCAACACCTACAACGACACCACCTCCAGCTCCCTGGGAGTACCGTACGACTATGGCTCCATGATGCACTAC] [+] EMBL FR0059488 [ TTGTGGGGGTCTGCTCTTTGTTTGCCCGCAGCTAAATTTCCAGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCATGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTCCATAATAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCGACTTCAAACCCTGGAGCGGAGAAGCAAATTATATT ] [+] EMBL CA591682 [ GTTTGCCCGCAGCTAAATTTTCAGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCGTGGAAGGAGACATCGTGGTTGACGAGTGGCAAACTCGAAATTCCATAATAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGGTTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGATCTGCATCGACTTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCTTCTCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCG ] consensusID : consensus_2046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 188 fasta sequence [TGGGGATCTGCTCGTTTGGGTGCGCTCAACTAAATTTCCATACCATCACCTCCACCATCNTCTTTATTTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCATGGAAGGAGACATCGTGGTTGATGAGGAGCAAACTCGAAATTCTCATAATAGGGGATGAGNACAGGCTGGCCAAGACG] [+] EMBL FR0059647 [TGGGGATCTGCTCGTTTGGGTGCGCTCAACTAAATTTCCATACCATCACCTCCACCATCNTCTTTATTTGGACATTTTTGACATAAACGAAGCGGAAGGGTTGGATCTCATGGAAGGAGACATCGTGGTTGATGAGGAGCAAACTCGAAATTCTCATAATAGGGGATGAGNACAGGCTGGCCAAGACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2046#0 CTACTTCTTTATTGGCTTTTGTGGGGGTCTGCTC-TTTGTTTGCCCGCAGCTAAATTTCC 59 consensus_2046#1 ---------------------TGGGGATCTGCTCGTTTGGGTGCGCTCAACTAAATTTCC 39 ***** ******* **** *** * ** ********** consensus_2046#0 AGACCATGATGTGGACGGTGGACGGGATCTGGACATTTTTGACATAAACGAAGCGGAAGG 119 consensus_2046#1 ATACCATCACCTCCACCATCNTCTTTATTTGGACATTTTTGACATAAACGAAGCGGAAGG 99 * ***** * * ** * * ** ******************************* consensus_2046#0 GTTGGATCTCGTGGAAGGAGACATCGTGGTTGATGAGTGGCAAACTCGAAATTC-CATAA 178 consensus_2046#1 GTTGGATCTCATGGAAGGAGACATCGTGGTTGATGAGGAGCAAACTCGAAATTCTCATAA 159 ********** ************************** *************** ***** consensus_2046#0 TAGGGGATGAGTACAGGTGGCCCAAGACGATCCCGTATTATATGGAGGATGACTTGGAGG 238 consensus_2046#1 TAGGGGATGAGNACAGGCTGGCCAAGACG------------------------------- 188 *********** ***** * ******** consensus_2046#0 TTAACGCAAAGGGTGTGATCATGAAGGCCTTTGAGCAGTATCGTCTCAAGAGCTGCATCG 298 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 ACTTCAAACCCTGGAGCGGAGAAGCAAATTATATTTCCATTTTCAAAGGCAGTGGCTGCT 358 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 TCTCCTCTGTGGGAAACCGGCACGTGGGGAAGCAGAGGCTGTCCATTGGTAGCAACTGCG 418 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 ACCGCATCGCCACCATCGAACACGAGTTCCTCCACGCTCTGGGTTTCTGGCACGAGCAGT 478 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 CGAGAGCCGATCGGGACGATTACGTCAAAATCATGTGGGACCGCATCACAGAGGATAAAC 538 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 AGCACAACTTCAACACCTACAACGACACCACCTCCAGCTCCCTGGGAGTACCGTACGACT 598 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 ATGGCTCCATGATGCACTAC 618 consensus_2046#1 -------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |