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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2065#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[TGGGAAGAACTAGAGCGGAAGGTTCTGGTTCTCCATCAACGGAGCAGGAACCTTAGTGGAACCTGAGAGCTCAGTCATGAATGCAGACAGCAGAGAGTTGTCCCTCGGCAGCAGCGAGGATGAAACCCAAACTCTCTTCTCCTGCTCCGACCTCATCTTCAGTAGCGAGGAGAAAAGCCTGCTGGACTGGGCAGTGGAGCCTGACTGTGCTCTGAACGATAGCGAGACAGAAGACTTCCTTCATGCAGTGGACCCTAATGAAGTGTTCCCCCGTGGCCCCCCTATGGCCTTGTCATCTGAGAGTGACTGTAGTCTTTCAGAGGACCCGCCGGTCGTCAGTCCGGTAACAATGGTGACCACCCCGGTGGAGCCAGCGACTGTTTACCAGGTTGTTTATGACCTGAGTGGCCTGGGCACTGTAAAGCCTGAACCTGGGCAGGAGAACGTGGTCTCCATCGAGCTTGATGACTGGGCCTCTAAGGTCTTAATTTCGGACTCGTGTATCGTTGGCGAGCTTCCCGTGTTCTCCACAGCCCATGTCAACCCTCCGAGCCCTGACGGCAATCTGTTCTACGCTGAACTCCAGCTGACAGAGGAGGAGCAGAAGCTGCTGAGTCAGGAG]
[+] EMBL BU804529 [TGGGAAGAACTAGAGCGGAAGGTTCTGGTTCTCCATCAACGGAGCAGGAACCTTAGTGGAACCTGAGAGCTCAGTCATGAATGCAGACAGCAGAGAGTTGTCCCTCGGCAGCAGCGAGGATGAAACCCAAACTCTCTTCTCCTGCTCCGACCTCATCTTCAGTAGCGAGGAGAAAAGCCTGCTGGACTGGGCAGTGGAGCCTGACTGTGCTCTGAACGATAGCGAGACAGAAGACTTCCTTCATGCAGTGGACCCTAATGAAGTGTTCCCCCGTGGCCCCCCTATGGCCTTGTCATCTGAGAGTGACTGTAGTCTTTCAGAGGACCCGCCGGTCGTCAGTCCGGTAACAATGGTGACCACCCCGGTGGAGCCAGCGACTGTTTACCAGGTTGTTTATGACCTGAGTGGCCTGGGCACTGTAAAGCCTGAACCTGGGCAGGAGAACGTGGTCTCCATCGAGCTTGATGACTGGGCCTCTAAGGTCTTAATTTCGGACTCGTGTATCGTTGGCGAGCTTCCCGTGTTCTCCACAGCCCATGTCAACCCTCCGAGCCCTGACGGCAATCTGTTCTACGCTGAACTCCAGCTGACAGAGGAGGAGCAGAAGCTGCTGAGTCAGGAG]
consensusID : consensus_2065#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 544 fasta sequence
[TCTGGTTCTCCACCAACGGAGCAGGAACCTTAGTGGAACCTGAGAGCTCAATGACTGGGCCTCTAAGGTCTTAATTTCGGACTCGTGTATCGTTGGCGAGCTTCCCGTGTTCTCCACAGCCCATGTCAACCCTCCGAGCCCTGACGGCAATCTGTTCTACGCTGAACTCCAGCTGACAGAGGAGGAGCAGAAGCTGCTGAGTCAGGAGGGAGTTTCTCTTCCCACCAACCTTCCTCTCACCAAGGCTGAGGAAAGAGTCCTGAAGAGGATTCGGAGGAAGATTCGGAACAAACAGTCAGCTCAAGACAGCCGGCGGCGCAGGGAAGGAATACATCGACACGCTGGAGAGCAGGGCAGCAGCATGTTCAGCACAGAACAAAGAGCTGCAGCGGACGGTGGAGCATCTGGAGAAACGTAACATGTCTCTGTTGATGCAACTGCGACAACTTCAGTCTCTCATCAAACAGACGGTCAGCAAAGGAGCTCAGACCAGCACCTGCTTACTGATCATCCTCCTGTCTCTGGCTCTCATCATCATGCCCAG]
[+] EMBL FR0062937 [TCTGGTTCTCCACCAACGGAGCAGGAACCTTAGTGGAACCTGAGAGCTCAATGACTGGGCCTCTAAGGTCTTAATTTCGGACTCGTGTATCGTTGGCGAGCTTCCCGTGTTCTCCACAGCCCATGTCAACCCTCCGAGCCCTGACGGCAATCTGTTCTACGCTGAACTCCAGCTGACAGAGGAGGAGCAGAAGCTGCTGAGTCAGGAGGGAGTTTCTCTTCCCACCAACCTTCCTCTCACCAAGGCTGAGGAAAGAGTCCTGAAGAGGATTCGGAGGAAGATTCGGAACAAACAGTCAGTTCAAGACAGCCGGCGGCGCAGGGAAGGAATACATCGACACGCTGGAGAGCAGGGCAGC ]
[+] EMBL CA589234 [ AGCAGGAACCTTAGTGGAACCTGAGAGCTCAATGACTGGGCCTCTAAGGTCTTAATTTCGGACTCGTGTATCGTTGGCGAGCTTCCCGTGTTCTCCACAGCCCATGTCAACCCTCCGAGCCCTGACGGCAATCTGTTCTACGCTGAACTCCAGCTGACAGAGGAGGAGCAGAAGCTGCTGAGTCAGGAGGGAGTTTCTCTTCCCACCAACCTTCCTCTCACCAAGGCTGAGGAAAGAGTCCTGAAGAGGATTCGGAGGAAGATTCGGAACAAACAGTCAGCTCAAGACAGCCGGCGGCGCA GGAAGGAATACATCGACACGCTGGAGAGCAGGGCAGCAGCATGTTCAGCACAGAACAAAGAGCTGCAGCGGACGGTGGAGCATCTGGAGAAACGTAACATGTCTCTGTTGATGCAACTGCGACAACTTCAGTCTCTCATCAAACAGACGGTCAGCAAAGGAGCTCAGACCAGCACCTGCTTACTGATCATCCTCCTGTCTCTGGCTCTCATCATCATGCCCAG]
consensusID : consensus_2065#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 476 fasta sequence
[AGCATCTGGAGAAACGTAACATGTAACTATTATTGTTATTATTATTGTTGTTTATGTGTACAGCAGCTTAACTCTGGACTATTGGATCAGAGTCCAGCTTTGATCTAAAAGGAACGTTTGTCTTCTTAAATTAGACAACTTCAGTCTCTCATCAAACAGACGGTCAGCAAAGGAGCTCAGACCAGCACCTGCTTACTGATCATCCTCCTGTCTCTGGCTCTCATCATCATGCCCAGCTTCAGCCCGTTCAGACGAAGTTGGTCCTCAGATGACTTCAGGCCGATCGGAGTTCTGTCCAGAAACATCCTGACTGACTCCGCCTCCTGGCGGACTGTGGTGGATGATGTCGACAGACGGGCAGATTCAGAAGTCAGGCAGACTGGACCTGCAGACGTATCAGAACCAACACAAGTACCGGAAAACAGAACCCAGGATGGGGGCCAAATCAGCACCGCCTCTCCCCCAGGCAGACAGAA]
[+] EMBL FR0056131 [AGCATCTGGAGAAACGTAACATGTAACTATTATTGTTATTATTATTGTTGTTTATGTGTACAGCAGCTTAACTCTGGACTATTGGATCAGAGTCCAGCTTTGATCTAAAAGGAACGTTTGTCTTCTTAAATTAGACAACTTCAGTCTCTCATCAAACAGACGGTCAGCAAAGGAGCTCAGACCAGCACCTGCTTACTGATCATCCTCCTGTCTCTGGCTCTCATCATCATGCCCAGCTTCAGCCCGTTCAGACGAAGTTGGTCCTCAGATGACTTCAGGCCGATCGGAGTTCTGTCCAGAAACATCCTGACTGACTCCGCCTCCTGGCGGACTGTGGTGGATGATGTCGACAGACGGGCAGATTCAGAAGTCAGGCAGACTGGACCTGCAGACGTATCAGAACCAACACAAGTACCGGAAAACAGAACCCAGGATGGGGGCCAAATCAGCACCGCCTCTCCCCCAGGCAGACAGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2065#0 TGGGAAGAACTAGAGCGGAAGGTTCTGGTTCTCCATCAACGGAGCAGG-AACCTTAGTGG 59
consensus_2065#1 -----------------------TCTGGTTCTCCACCAACGGAGCAGG-AACCTTAGTGG 36
consensus_2065#2 -------------------------AGCATCTGGAGAAACGTAACATGTAACTATTATTG 35
* *** * **** * ** * *** * * *
consensus_2065#0 AACCTGAGAGCTCAGTCATGAATGCAGACAGCAGAGAGTTGTCCCTCGGCAGCAGCGAGG 119
consensus_2065#1 AACCTGAGAGCTCA---ATGACTG--GGCCTCTAAGGTCTTAATTTCGGACTCG------ 85
consensus_2065#2 TTATTA-----TTATTGTTGTTTA--TGTGTACAGCAGCTTAACTCTGGACTAT------ 82
* * * ** * * **
consensus_2065#0 ATGAAACCCAAACTCTCTTCTCCTGCTCCGACCTCATCTTCAGTAGCGAGGAGAAAAGCC 179
consensus_2065#1 -TGTATCGTTGGCGAGCTTCCCGTGTTCT--CCACAGCCCATGTC----------AACCC 132
consensus_2065#2 -TGGATCAGAGTCCAGCTT----TGATCTAAAAGGAACGTTTGTC--------------T 123
** * * * *** ** ** * * **
consensus_2065#0 TGCTGGACTGGGCAGTGGAGCCTGACTGTGCTCTGAACGATAGCGAGACAGAAGACTTCC 239
consensus_2065#1 TCCGAGCCCTGACGGC--AATCTG-TTCTACGCTGAACTCCAGCT-GACAGAGGAGGAGC 188
consensus_2065#2 TCTTAAATTAGACAAC----TTCAGTCTCTCATCAAAC---AGACGGTCAGCAAAGGAGC 176
* * * * *** ** * *** * *
consensus_2065#0 TTCATGCAGTGGACCCTAATGAAGTGTTCCCCCGTGGCCCCCCTATGGCCTTGTCATCTG 299
consensus_2065#1 AGAAGCTGCTGAGTCAGGAGGGAGTTTCTCTTC-----CCACCAACCTTCCTCTCACCAA 243
consensus_2065#2 TCAGACCAGCACCTGCTTACTGATCATCCTCCTGTC-TCTGGCTCTCATCATCATGCCCA 235
* * * * * * * *
consensus_2065#0 AGA-GTGACTGTAGTCTTTCAGAGGACCCGCCGGTCGTCAGTCCGGTAACAATGGTGACC 358
consensus_2065#1 GGCTGAGGAAAGAGTCCTGAAGAGGATTCGGAGGAAG---ATTCGGAACAAACAGT---C 297
consensus_2065#2 GCTTCAGCCCGTTCAGACGAAGTTGGTCCTCAGATGA---CTTCAGGCCGATCGGAGTTC 292
* ** * * * * * * * * *
consensus_2065#0 ACCCCGGTGGAGCCAGCGACTGTTTACCAGGTTGTTTATGACCTGAGTGGCCTGGGCACT 418
consensus_2065#1 AGCTCAAGACAGCCGGCGGCG------CAGGGAAGGAATACATCGACACGCTGGAGAGCA 351
consensus_2065#2 TGTCCAGAAACATCCTGACTGACT---CCGCCTCCTGGCGGACTGTGGTGGATGATGTCG 349
* * * * * * * *
consensus_2065#0 GTAAAGCCTGAACCTGGGCA-GGAGAACGTGGTCTCCATCGAGCTTGATGACTGGGCCTC 477
consensus_2065#1 GGGCAGCAGCATGTTCAGCA-CAGAACAAAGAGCTGCAGCGGAC--GGTGGA-GCATCTG 407
consensus_2065#2 ACAGACGGGCAGATTCAGAAGTCAGGCAGACTGGACCTGCAGACGTATCAGAACCAACAC 409
* * * * * * * * *
consensus_2065#0 TAAGGTCTTAATTTCGGACTCGTGTATCGTTGGCGAGCTTCCCGTGTTCTCCAC-AGCCC 536
consensus_2065#1 GAGAAACGTAACATGTCTCTGTTGATGCAACTGCGACAACTTCAGTCTCTCATC-AAACA 466
consensus_2065#2 AAGTACCGGAAAACAGAACCCAGGATGGGGGCCAAATCAGCACCGCCTCTCCCCCAGGCA 469
* * ** * * * * **** * * *
consensus_2065#0 -ATGTCAACCCTCCGAGCCCTGACGGCAATCTGTTCTACGCTGAACTCCAGCTGACAGAG 595
consensus_2065#1 GACGGTCAGCAAAGGAGCTCAGACCAGCACCTGCTTACTGATCATCCTCCTGTCTCTGGC 526
consensus_2065#2 GACAGAA----------------------------------------------------- 476
*
consensus_2065#0 GAGGAGCAGAAGCTGCTGAGTCAGGAG 622
consensus_2065#1 TCTCATCATCA--TGCCCAG------- 544
consensus_2065#2 ---------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |