These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 727 fasta sequence [TTTGCGACACCAACTAATGGGCTTTAATTAGTTAGTACTATGTATATACAGTTATACATTACCATGCTGTTGGGCACCATGTTGTTGTAATTTTTTTTATTTATTTTTTGTGGTGTATGCATGGTTCAGTTTTGGTTTTTCACAGCCTCTCTCTGTACAACACAGTCAACAGACAGCTACAAAATATGCACATTTTAAGGGATAAGAATGCATATGAATGTCAATAGCAGAGACAAAAAGTCCATTAAGAGCAGAGTGTTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCTCAAGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTTGATCTTCATGGTGCTGGGGGCCAGAGCAGTGATTTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCGTACAGATCCTTACGGATATCGATGTCGCACTTCATGATGCTGTTGTAAGCGGTCTCGTGGATACCAGCGGACTCCATACCAATGAAGGATGGCTGGAAGAGGGTCTCGGGGCAACGGAACCTCTCGTTACC] [+] EMBL FR0055667 [TTTGCGACACCAACTAATGGGCTTTAATTAGTTAGTACTATGTATATACAGTTATACATTACCATGCTGTTGGGCACCATGTTGTTGTAATTTTTTTTATTTATTTTTTGTGGTGTATGCATGGTTCAGTTTTGGTTTTTCACAGCCTCTCTCTGTACAACACAGTCAACAGACAGCTACAAAATATGCACATTTTAAGGGATAAGAATGCATATGATTGTCAGTAGCAGAGACAAAAGGTCCATTAGGAGCATAGTGTTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCTCAAGACAGCTGGTGGTGCAAAAGATGAAAAAGCTGGCCAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGCAGGTGGACAGGGAAGCCAGGTTAGAGCCACCGATCCAGACGGAGTAATTCCTCTCGGAAGGGGCAATGATCTTGATCCTCATGGGGCTGGGGGCCAGAGCATCGATTTCC ] [+] EMBL CA332680 [ TATGCATGGTTCAGTTTTGGTTTTTCACAGCCTCTCTCTGTACAACACAGTCAACAGACAGCTACAAAATATGCACATTTTAAAGGATAAGAATGCATATGAATGTCAATAGCAGAGACAAAAAGTCCATTAAGAGCAGAGTGTTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCTCAAGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTTGATCTTCATGGTGCTGGGGGCCAGAGCAGTGATTTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCGTACAGATCCTTACGGATATCGATGTCGCACTTCATGATGCTGTTGTAAGCGGTCTCGTGGATACCAGCGGACTCCATACCAATGAAGGATGGCTGGAAGAGGGTCTCGGGGCAACGGAACCTCTCGTTACC] [-] EMBL FR0055349 [ TCTTGGTTTTTCACAGCCTCTCTCTGACAACCACAGTCAACAGACAGCTACAAAATATGCACATTTT GATAAGAATGCATATGAATGTCAATAGCAGAGACAAAAAGTCCATTAAGAGCAGAGTGCTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCTCAAGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTTGATCTTCATGGTGCTGGGGACCAGAGCAGTGATTGCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGG ] consensusID : consensus_2073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 574 fasta sequence [TCACCATTAATTACCAAATGGGGAGCTGACATTTGGACCTCTTCTAACTCATCTTGAAGGGGAAGCCTTGGTACCATTGGGTCAGGCCCCAGTCGGTCGCCACACGCCTCCGTGTGGGCCTCTGGTCTCACTTTCGAGAGAGACAGGGGGCTTCTTCCTCCGGAATCTGAGTCAGTATCGGAGCCTCTCCAGAACCAGGGGTTGTGGGTTTGCTCAAGCAGCCTGCGGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTAAGGGGCCAGAGCAGTGATTTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCGTACAGATCCTTACGGATATCCATGGTCCACTTCATGATGCTGTTGTAAGCGGGCTCCGGGATACC] [+] EMBL CA333244 [TCACCATTAATTACCAAATGGGGAGCTGACATTTGGACCTCTTCTAACTCATCTTGAAGGGGAAGCCTTGGTACCATTGGGTCAGGCCCCAGTCGGTCGCCACACGCCTCCGTGTGGGCCTCTGGTCTCACTTTCGAGAGAGACAGGGGGCTTCTTCCTCCGGAATCTGAGTCAGTATCGGAGCCTCTCCAGAACCAGGGGTTGTGGGTTTGCTCAAGCAGCCTGCGGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAGCACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATCTGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTCTCGGGAGGGGCAATGATCTAAGGGGCCAGAGCAGTGATTTCCTTCTGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCGTACAGATCCTTACGGATATCCATGGTCCACTTCATGATGCTGTTGTAAGCGGGCTCCGGGATACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2073#0 TTTGCGACACCAACTAATGGGCTTTAATTAGTTAGTACTATGTATATACAGTTATACATT 60 consensus_2073#1 ------------------------------------------------TCACCATTAATT 12 ** *** consensus_2073#0 ACCATGCTGTTGGGCACCATGTTGTTGTAATTTTTTTTATTTATTTTTTGTGGTGTATGC 120 consensus_2073#1 ACCAAA----TGGGGAGC-TGACATTTGGACCTCTTCTAACTCATCTTGAAGGGGAAGCC 67 **** **** * * ** ** * * ** ** * * ** ** * * * consensus_2073#0 ATGGTTCAGTTTTGGTTTTTCACAGCCTCTCTCTGTACAACACAGTCAACAGACAGCTAC 180 consensus_2073#1 TTGGTACCATTGGGTCAGGCCCCAGTCGGTCGCCACACGCCTCCGT--GTGGGCCTCTG- 124 **** * ** * * *** * ** * ** * * ** * * ** consensus_2073#0 AAAATATGCACATTTTAAGGGATAAGAATGCATATGAATGTCAATAGCAGAGACAAAA-- 238 consensus_2073#1 ---GTCT-CACTTTCGAGAGAGACAGGGGGCTTCTTCCT-CCGGAATCTGAGTCAGTATC 179 * * *** ** * * ** ** * * * * * * *** ** * consensus_2073#0 --AGTCCATTAAGAGCAGAGTGTTGCTGTGCCGCATAGGTTGATCCTTCTCGACTGGTCT 296 consensus_2073#1 GGAGCCTCTCCAGAACCAGGGGTTG----------TGGGTT-----TGCTCAAGCAGCCT 224 ** * * *** * * **** * **** * *** * * ** consensus_2073#0 CAAGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAG 356 consensus_2073#1 GCGGACAGCTGGTGGTGCAAAAGATGAAGAAGCTGGACAAGAAGGTGGGGGATTTAGAAG 284 ********************************************************* consensus_2073#0 CACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATC 416 consensus_2073#1 CACTTCCTGTGGACAATGCTGGGGCCTGCCTCGTCGTACTCCTGCTTGGAGATCCACATC 344 ************************************************************ consensus_2073#0 TGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTC 476 consensus_2073#1 TGCTGGAAGGTGGACAGGGAAGCCAGGATAGAGCCACCGATCCAGACGGAGTACTTCCTC 404 ************************************************************ consensus_2073#0 TCGGGAGGGGCAATGATCTTGATCTTCATGGTGCTGGGGGCCAGAGCAGTGATTTCCTTC 536 consensus_2073#1 TCGGGAGGGGCAATGATCTAA---------------GGGGCCAGAGCAGTGATTTCCTTC 449 ******************* ************************ consensus_2073#0 TGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCG 596 consensus_2073#1 TGCATACGGTCAGCAATACCAGGGTACATGGTGGTACCACCGGAGAGCACATTGTTGGCG 509 ************************************************************ consensus_2073#0 TACAGATCCTTACGGATATCGATGTCGCACTTCATGATGCTGTTGTAAGCGGTCTCGTGG 656 consensus_2073#1 TACAGATCCTTACGGATATCCATGGTCCACTTCATGATGCTGTTGTAAGCGGGCTCCGGG 569 ******************** *** ************************* *** ** consensus_2073#0 ATACCAGCGGACTCCATACCAATGAAGGATGGCTGGAAGAGGGTCTCGGGGCAACGGAAC 716 consensus_2073#1 ATACC------------------------------------------------------- 574 ***** consensus_2073#0 CTCTCGTTACC 727 consensus_2073#1 ----------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |