These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [GACGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGGTGAGTGTCTCTGTGACGTGTGAAGCCGATCGTTGCTTGTGTTCCTATTTTCATTATCTATTTCCTTATTGTACGCCCAAGCTGGAGGACGGAAGCATAAAATGCGCTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATATAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCTCAGGACTACCGCTTCAAACCTCCACTGGAGGCGACGCAGAGCAGCACACCTCTGGAGGACTTCAGTTCCACCTATTTTCCCCCGAACTCTGACATTCCAACGCCAGA] [+] EMBL CA846220 [GACGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGGTGAGTGTCTCTGTGACGTGTGAAGCCGATCGTTGCTTGTGTTCCTATTTTCATTATCTATTTCCTTATTGTACGCCCAAGCTGGAGGACGGAAGCATAAAATGCGCTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATATAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCTCAGGACTACCGCTTCAAACCTCCACTGGAGGCGACGCAGAGCAGCACACCTCTGGAGGACTTCAGTTCCACCTATTTTCCCCCGAACTCTGACATTCCAACGCCAGA] consensusID : consensus_2111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 576 fasta sequence [ATGACAGAGGAGCAGGTGTGGGAGGTCACCAGAGAGTCTCTGGAAGAGGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGCTGGAGGACGGAAGCATAAAATGCGTTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCTCAGGACTA] [+] EMBL BU806930 [ATGACAGAGGAGCAGGTGTGGGAGGTCACCAGAGAGTCTCTGGAAGAGGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGCTGGAGGACGGAAGCATAAAATGCGTTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATC ] [+] EMBL CA589299 [ GAGGCTGAATGAGACAGAAGAGACGGGCTGCGTCTGAGCTGGAGGACGGAAGCATAAAATGCGTTAGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGGCAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGTTTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCT ] [+] EMBL BU807803 [ AGTGACTGAACTTCGGAACCCCGAACGGTCCATTATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGATGCTGCAGCATGGAAATACAGAGAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTAAAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGACCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGGATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGAAGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCATCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCTGGGCTCAGGACTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2111#0 GACGCTGAATGAGACAGAAGAGACGGGCTGCGTC-TGAGGTGAGTGTCTCTGTGACGTGT 59 consensus_2111#1 ----------ATGACAGAGGAGCAGGTGTGGGAGGTCACCAGAGAGTCTCTGGAA----- 45 ****** *** ** ** * * * *** ******* * consensus_2111#0 GAAGCCGATCGTTGCTTGTGTTCCTATTTTCATTATCTATTTCCTTATTGTACGCCCAAG 119 consensus_2111#1 GAGGCTGAATGAGACAGAAGAGACGGGCT----------------------GCGTCTGAG 83 ** ** ** * * * * * ** * ** consensus_2111#0 CTGGAGGACGGAAGCATAAAATGCGCTAGTGACTGAACTTCGGAACCCCGAACGGTCCAT 179 consensus_2111#1 CTGGAGGACGGAAGCATAAAATGCGTTAGTGACTGAACTTCGGAACCCCGAACGGTCCAT 143 ************************* ********************************** consensus_2111#0 TATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGA 239 consensus_2111#1 TATCTCCACTGAGATAAACACTCCAGGACTGTTGGCCACATCAAGGTTTCGTGTGCTCGA 203 ************************************************************ consensus_2111#0 TGCTGCAGCATGGAAATACAGGCAAATATAGCAGGACGAATGACAGGAATTAAGGATTTA 299 consensus_2111#1 TGCTGCAGCATGGAAATACAGGCAAATGTAGCAGGACGAATGACAGGAATTAAGGATTTA 263 *************************** ******************************** consensus_2111#0 AAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGA 359 consensus_2111#1 AAGGGATGAGCAAGCTCAGGGAGTCCTGGCTGCCACACACACACAGTCAGTAGAGGGAGA 323 ************************************************************ consensus_2111#0 CCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGG 419 consensus_2111#1 CCTGCCACAGAAAGACGCTCAAAGCCGCAGTCATGCCAAACTCCCAAGAGGAGAGCCTGG 383 ************************************************************ consensus_2111#0 ATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGA 479 consensus_2111#1 ATGAGGATGTGGTCTTTCTGCCGGTCAGCGAGTCCTCGCCACAGTTCATCTACTGCGAGA 443 ************************************************************ consensus_2111#0 AGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCA 539 consensus_2111#1 AGGAGCGCCGGGCTGTGGAGAGGCTCCTGAGCTCGGGGCCTGAGGCCTTCTACAGCTCCA 503 ************************************************************ consensus_2111#0 TCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCT 599 consensus_2111#1 TCGGTACGGAGCTCCCAGGCTGCTTCTTGTCTCCTGAAGAGGTGTGTCAGATCAGCAGCT 563 ************************************************************ consensus_2111#0 GGGCTCAGGACTACCGCTTCAAACCTCCACTGGAGGCGACGCAGAGCAGCACACCTCTGG 659 consensus_2111#1 GGGCTCAGGACTA----------------------------------------------- 576 ************* consensus_2111#0 AGGACTTCAGTTCCACCTATTTTCCCCCGAACTCTGACATTCCAACGCCAGA 711 consensus_2111#1 ---------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |