These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 793 fasta sequence [GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGGCCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGAGCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCAGAGATGGTCCTGG] [+] EMBL BU804656 [GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTTTTTGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAG ] [+] EMBL CA591117 [ ACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGGCCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGAGCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCAGAGATGGTCCTGG] consensusID : consensus_2115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 584 fasta sequence [TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGGGAGATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG] [+] EMBL BU806404 [TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG] [+] EMBL FR0062987 [ ATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGTGAGATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGTTTATAAAGCGCTTGGGCCTGAATTCGAGGAGAAGCTGACCCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2115#0 GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGC 60 consensus_2115#1 -------TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGC 53 ***************************************************** consensus_2115#0 AGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGC 120 consensus_2115#1 AGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGC 113 ********************************* ** * ************* ****** consensus_2115#0 CTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAG 180 consensus_2115#1 CTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGGGAG 173 ********************************* **************** ********* consensus_2115#0 TTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGAT 240 consensus_2115#1 ATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGAT 233 ******* *************************************************** consensus_2115#0 CTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGA 300 consensus_2115#1 CTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGA 293 ************************************************************ consensus_2115#0 CCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTC 360 consensus_2115#1 CCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTC 353 ************************************************************ consensus_2115#0 TGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAA 420 consensus_2115#1 TGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAA 413 ************************************************************ consensus_2115#0 CAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTA 480 consensus_2115#1 CAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTA 473 ************************************************************ consensus_2115#0 AGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAA 540 consensus_2115#1 AGAAAG------------------------------------------------------ 479 ****** consensus_2115#0 GAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGC 600 consensus_2115#1 ---------------CGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGC 524 ********************************************* consensus_2115#0 GTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGG 660 consensus_2115#1 GTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG 584 ****************************** ***************************** consensus_2115#0 CCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGA 720 consensus_2115#1 ------------------------------------------------------------ consensus_2115#0 GCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCA 780 consensus_2115#1 ------------------------------------------------------------ consensus_2115#0 GAGATGGTCCTGG 793 consensus_2115#1 ------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |