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Takifugu rubripes
cluster # 2115 cluster # 2115       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2115#0 length = 793 sequences # 2  
consensus_2115#1 length = 584 sequences # 2  

consensusID : consensus_2115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 793
fasta sequence
                              [GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGGCCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGAGCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCAGAGATGGTCCTGG]

[+] EMBL BU804656             [GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTTTTTGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAG                                                                                                                                                                                                                                  ]
[+] EMBL CA591117             [                                                                                                                                                                                                                                        ACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAAGAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGGCCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGAGCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCAGAGATGGTCCTGG]


>consensus_2115#0 GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGC AGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGC CTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAG TTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGAT CTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGA CCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTC TGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAA CAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTA AGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAA GAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGC GTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGG CCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGA GCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCA GAGATGGTCCTGG



consensusID : consensus_2115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 584
fasta sequence
                              [TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGGGAGATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG]

[+] EMBL BU806404             [TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAGTTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG]
[+] EMBL FR0062987            [                                                                 ATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGCCTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGTGAGATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTGAATGGAAACAATGGTTTATAAAGCGCTTGGGCCTGAATTCGAGGAGAAGCTGACCCT                                                                                                                                                                                                                                                                                               ]


>consensus_2115#1 TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGCAGCTTAA GTTTTATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGCCTTCTCA AAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGGGAGATTCATC TGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGATCTGCCTG AATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGACCCTGAC GGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTCTGGCCTC AGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAACAGAGAC CAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTAAGAAAGC GGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGCGTCTGAGGGAGAGCCA GCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2115#0      GGAAATTTTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGC 60
consensus_2115#1      -------TTCCTCTGAAGACCCACTAAAGTGGATTGTCTGGAATCCAGTACAGAACAGGC 53
                             *****************************************************

consensus_2115#0      AGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCCCTTTTTCCCCCCAACATTTTTCCAGC 120
consensus_2115#1      AGCTTAAGTTTTATTTCTCTCTCTCTCTATCTCGCTGTGTCCCCCCAACATTGGTCCAGC 113
                      ********************************* ** * *************  ******

consensus_2115#0      CTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGTTGGATTTAACAGGGCGTGTTTGGGAG 180
consensus_2115#1      CTTCTCAAAAGGACCAGTTTTCTTCTCTTCTGGATGGATTTAACAGGGCGAGTTTGGGAG 173
                      ********************************* **************** *********

consensus_2115#0      TTTCATCTCCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGAT 240
consensus_2115#1      ATTCATCTGCTGTACTTGGGCGCCTCAGAGGAATGACAGCAACTGGGAAAGGACTGGGAT 233
                       ******* ***************************************************

consensus_2115#0      CTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGA 300
consensus_2115#1      CTGCCTGAATGGAAACAATGGATTATAAAGCGCTTGGGCATGAATTCGAGGAGAAGCTGA 293
                      ************************************************************

consensus_2115#0      CCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTC 360
consensus_2115#1      CCCTGACGGACAAATCTCTGCCGCTGGAGACAGATGGAGACCGAGGTTTGAAGGATTCTC 353
                      ************************************************************

consensus_2115#0      TGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAA 420
consensus_2115#1      TGGCCTCAGACGACTCGGCCGTCAACGACCTGTCCCCTAAAACGGACTCCAGCCCCAAAA 413
                      ************************************************************

consensus_2115#0      CAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTA 480
consensus_2115#1      CAGAGACCAAGACAGACTTCAGTCCATCCACCCCAGGAACCAGCAGCAGCCCTCAGCCTA 473
                      ************************************************************

consensus_2115#0      AGAAAGATTCGATGACCTCAGAACAACGACAGAAACTAGCAAAGGAGCGGCGGGAGGAAA 540
consensus_2115#1      AGAAAG------------------------------------------------------ 479
                      ******                                                      

consensus_2115#0      GAGCCAGATATATCGCGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGC 600
consensus_2115#1      ---------------CGGCGAAGAAAGTGCAGTGGTTGGAGAAGGAGGAGAAGGCTCGGC 524
                                     *********************************************

consensus_2115#0      GTCTGAGGGAGAGCCAGCTGGAGGACCGCAGGCGGAGGCTGGAGGAGCAGCGGCTGAAGG 660
consensus_2115#1      GTCTGAGGGAGAGCCAGCTGGAGGACCGCANGCGGAGGCTGGAGGAGCAGCGGCTGAAGG 584
                      ****************************** *****************************

consensus_2115#0      CCGAGAAACGCCGAGCCCTGCTGGAGGAAAGCAGAGGCAGAAATTGGAGAAGAACAAGGA 720
consensus_2115#1      ------------------------------------------------------------
                                                                                  

consensus_2115#0      GCGCTATGAGGCCGCCATCAAGAGGTCGACCAAGAAGACGTGGGCAGAGATTCGCCAGCA 780
consensus_2115#1      ------------------------------------------------------------
                                                                                  

consensus_2115#0      GAGATGGTCCTGG 793
consensus_2115#1      -------------
                                   




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)