These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2134#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 618 fasta sequence [TACCCTGCTCTGATGCTAGCCCGACGCTGTTAGCGCCTCCACCGATCTGATTAAAATATTCAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACGTCAAACTACGGAGAGCAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGCTGGCGGCTCTTCACGCCACCCTGCCCATGAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTGTGTCAGTCTGCTCGACTGCTGCCTCAGGGCAGTTTGACGACCCTGCAGCAGGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGGAGGGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCGGGTCTACACCGACGTCCACACACAGAAGAACAGAGAGTACTGGGATTATGACGCACACGTGCCCAACTGGAGGCATCAAGACAACTAC] [+] EMBL CA590658 [TACCCTGCTCTGATGCTAGCCCGACGCTGTTAGCGCCTCCACCGATCTGATTAAAATATTCAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACGTCAAACTACGGAGAGTAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGCTGGCGGCTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGAC ACCCTGCAGCAGGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGGAGGGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCGGGTCTACACCGACGTCCACACACAGAAGAACAGAGAGTACTGGGATTATGACGCACACGTGCCCAACTGGAGGCATCAAGACAACTAC] [+] EMBL FR0061801 [ ACTACGGACACCAACGTTCTGCTAACTGGTTGCTAACAAGCTAACGTTGATGACGTGTGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGCTGGCGGCTCTTTACGCCACCCTGCCCATGAACATCCTCCTCAGGGGCTTTACACGCTCGCTCATCTTAGCTGTGTCAGTCTGCTCGACTGCTGTCTTATGGCAGTTTGACGACCCTGCAGC TGGTGCACGAGCATCCAA ] consensusID : consensus_2134#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 608 fasta sequence [TACCCTGCTCTGATGCTAGCCCGCCGCTGTTAGCGCCTCCACCGATCTGATTAAAATATTCAGTCACTTTAACCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACGTCAAACTACGGAGAGTGACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGCGTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTGGGGGGTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGACACCCTGCAGCAGGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGAGGGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCG] [+] EMBL BU807181 [TACCCTGCTCTGATGCTAGCCCGCCGCTGTTAGCGCCTCCACCGATCTGATTAAAATATTCAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACGTCAAACTACGGAGAGTGACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGCGTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTGGCGGCTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTCATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGACACCCTGCAGCAGGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCGTGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGAGGGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCAGCAAAGCTCG] [+] EMBL FR0060579 [ CTTTAACCGATATCACTCGCGTTTTTGACACACTGACACGGCGTCGTTGCTACGTCAAACTACGGAGAGTAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGGGCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGCGTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTGGGGGGTCTTCACGCCACCCTGCCCATCAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2134#0 TACCCTGCTCTGATGCTAGCCCGACGCTGTTAGCGCCTCCACCGATCTGATTAAAATATT 60 consensus_2134#1 TACCCTGCTCTGATGCTAGCCCGCCGCTGTTAGCGCCTCCACCGATCTGATTAAAATATT 60 *********************** ************************************ consensus_2134#0 CAGTCACTTTAATCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACG 120 consensus_2134#1 CAGTCACTTTAACCGATATCACTCGCGTTTTTGACACACTGACACGGCGGCGTTGCTACG 120 ************ *********************************************** consensus_2134#0 TCAAACTACGGAGAGCAACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGG 180 consensus_2134#1 TCAAACTACGGAGAGTGACGTCCTGCTAACTGGATGCTAACAAGCTAACGTTGATGACGG 180 *************** ******************************************* consensus_2134#0 GCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAG----------------------- 217 consensus_2134#1 GCGGACTTCCTCCGAGCTCGGCTATTTCAACGACGAGGTTAGCCGGCTAACTGTAGCCGC 240 ************************************* consensus_2134#0 ---------------------------------------------------------CTG 220 consensus_2134#1 GTTATTGATTTTGCGCCCCAGCAATGCAGTAAAAAATAAACAACCTTTCATCGACAACTG 300 *** consensus_2134#0 GCGGCTCTTCACGCCACCCTGCCCATGAACATCCTCCTCAGGGGCTTCACACGCTCGCTC 280 consensus_2134#1 GGGGGTCTTCACGCCACCCTGCCCATCAACATCCTCCTCAGGGGCTTCACACGCTCGCTC 360 * ** ********************* ********************************* consensus_2134#0 ATCTTAGCTGTGTCAGTCTGCTCGACTGCTGCCTCAGGGCAGTTTGACGACCCTGCAGCA 340 consensus_2134#1 ATCTTAGCTCTGTCAGTCTGCTCGACTGCTGCCTCAGGCCAGTTTGAC-ACCCTGCAGCA 419 ********* **************************** ********* *********** consensus_2134#0 GGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCG 400 consensus_2134#1 GGGGGCACGAGCATCCAAAACTGATGGTAAGCAGCGCACAGCGGGGGTGTTAGAGCCGCG 479 ************************************************************ consensus_2134#0 TGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGGGAG 460 consensus_2134#1 TGTGGTGGAGAGTCACTGCGCCGCCTTCCAGTATCGAGCTGACAAGTATTCAGAGGG-AG 538 ********************************************************* ** consensus_2134#0 GGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCA 520 consensus_2134#1 GGGAGGGTCCTGAACGCAACGCCTCAGAGCCAGCGATGCCTGGATCCACGCCAGCCAGCA 598 ************************************************************ consensus_2134#0 GCAAAGCTCGGGTCTACACCGACGTCCACACACAGAAGAACAGAGAGTACTGGGATTATG 580 consensus_2134#1 GCAAAGCTCG-------------------------------------------------- 608 ********** consensus_2134#0 ACGCACACGTGCCCAACTGGAGGCATCAAGACAACTAC 618 consensus_2134#1 -------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |