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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2148#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 771 fasta sequence
[GGACAGGTGAGGTAGAATAGTACACTTGTGCCTTTTGTTGCTAATACCTGAAGTTCTTCTACTCCAACAAGACAGCTGCTAATAATGACGGCTCTGCAGACGTCGATCCTGCTTCTGGCTCTCCTCAACCTGAGCGCGGCGCTGGTTTGTCCTGATGGAGGCACGTGTGAGGACAGGAACACCTGCTGCAGGAACTCCGCAGGTGGATACAGCTGCTGCCCGCTACCGCATGCTGAATGTTGCTCCGACCATCTGCACTGCTGCTACCAGGGGACGCTCTGTGACCTGGAACACCACAAATGTGTCAACAAAACGGATTCTGTGCCCTGGTTGAGCCGACTTCCTGCCGCCCCTCGGGTCCAGGCTGGGCTGACTGGGGTCATCTGTCCTGATTCTAAGACCATGTGTCCGGATGGCGCCACTTGCTGCCAGCTTCCCAGTGGTTCCATGGGCTGTTGCCTGTTCAGCAACGCCGTGTGCTGCGAGGACAAGCTCCACTGTTGCCCGGAAGGAACGAGGTGTGATCTCGCTCGCTCCAAGTGCGTTTCGCCATCGCAGCAGTGGTTCCCCATGATGCACAAAGTTCCGGCCACCACGAGAGCAGAGCATCCAGAGGCTTCTATAATATGTCCTGATGGAAAAAGCCGCTGCCAACTCGGCCACACATGCTGCCAGCTAGCCAGCGGCGCCTACGGCTGCTGCCCGCTCCAACAGGCTGTGTGCTGCAGCGATCACGAGCGCTGCTGCCCTGCAGGCACGCGCTGCGACCTG]
[+] EMBL CA846088 [GGACAGGTTCGTTAGTAT GTACACTTGTGCCTTTTGTTGCTAATACCTGAAGTTCTTCTACTCCAACAAGACAGCTGCTAATAATGACGGCTCTGCAGACGTCGATCCTGCTTCTGGCTCTCCTCAACCTGAGCGCGGCGCTGGTTTGTCCTGATGGAGGCACGTGTGAGGACAGGAACACCTGCTGCAGGAACTCCGCAGGTGGATACAGCTGCTGCCCGCTACCGCATGCTGAATGTTGCTCCGACCATCTGCACTGCTGCTACCAGGGGACGCTTTGTGACCTGGAACACCACAAATGTGTCAACAAAACGGTTTCTTTGCCCTGGTTGAGCCGACTTCCTGCCGCCCCTCGGGTCCAGGCTGGGCTGACTGGGGTCATCTGTCCTGATTCTAAGACCATGTGTCCGGATGGCGCCACTTGCTGCCAGCTTCCCAGTGGTTCCATGGGCTGTTGCCTGTTCAGCAACGCCGTGTGCTGCGAGGACAAGCTCCACTGTTGCCCGGAAGGAACGAGGTGTGATCTCGCTCGCTCCAAGTGCGTTTCGCCATCGCAGCAGTGGTTCCCCATGATGCACAAAGTTCCGGCCACCACGAGAGCAGAGCATCCAGAGGCTTCTATAATATGTCCTGATGGAAAAAGCCGCTGCCAACTCGGCCACACATGCTGCCAGCTAGCCAGCGGCGCCTACGGCTGCTGCCCGCTCCAACAGGCTGTGTGCTGCAGCGATCACGAGCGCTGCTGCCCTGCAGGCACGCGCTGCGACCTG]
[+] EMBL FR0058127 [ TGACGTAGAATAGTACACTTGTGCCTTTTGTTGCTAATACCTGAAGTTCTTCTACTCCAACAAGACAGCTGCTAATAATGACGGCTCTGCAGACGTCGATCCTGCTTCTGGCTCTCCTCAACCTGAGCGCGGCGCTGGTTTGTCCTGATGGAGGCACGTGTGAGGACAGGAACACCTGCTGCAGGAACTCCGCAGGTGGATACAGCTGCTGCCCGCTACCGCATGCTGAATGTTGCTCCGACCATCTGCACTGCTGCTACCAGGGGACGCTCTGTGACCTGGAACACCACACATGTGTCAACAAAACGCATTCTGTGCCCTt ]
consensusID : consensus_2148#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence
[AATATGTCCTGATGGAAAAAGCCGCTGCCAACTGGGCCACACATGCTGCCAGCTAGCCAGCGGCGCCTACGGCTGCTGCCCGCTCCAACAGGCTGTGTGCTGCAGCGATCACGAGCGCTGCTGCCCTGCAGGCACGCGCTGCGACCTGGAGCACGACGCCTGCGTGTCCGGCGCCACGCCAGTCCCAATGCTGAGGATCGCCGCCGTCCCCGGCGAAGGCGCGACGCCTGTTGTCCCAATCAAGATCGACAACAACAAGTGCGACGAGTCCACGACGTGTCCCGGGGACTCCACCTGCTGTAGGACGCTAGAAGGAGGCTGGGCCTGTTGCCCGTTGGCGCAGGCTGTGTGCTGTGACGATCACGTCCACTGCTGCCCTCACGACACCATCTGTAACCTGG]
[+] EMBL FR0063082 [AATATGTCCTGATGGAAAAAGCCGCTGCCAACTGGGCCACACATGCTGCCAGCTAGCCAGCGGCGCCTACGGCTGCTGCCCGCTCCAACAGGCTGTGTGCTGCAGCGATCACGAGCGCTGCTGCCCTGCAGGCACGCGCTGCGACCTGGAGCACGACGCCTGCGTGTCCGGCGCCACGCCAGTCCCAATGCTGAGGATCGCCGCCGTCCCCGGCGAAGGCGCGACGCCTGTTGTCCCAATCAAGATCGACAACAACAAGTGCGACGAGTCCACGACGTGTCCCGGGGACTCCACCTGCTGTAGGACGCTAGAAGGAGGCTGGGCCTGTTGCCCGTTGGCGCAGGCTGTGTGCTGTGACGATCACGTCCACTGCTGCCCTCACGACACCATCTGTAACCTGG]
consensusID : consensus_2148#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[TCCTGCGAAATTTGCCTTTAGGAGCAACGTTAATGTGACAGCTGGACAAACTGCGCCGGACAGGTTCGGAGTATGTACACTTGTGCCTTTTGTTGCTAATACCTGAAGTTCTTCTACTCCAACAAGACAGCTGCTAATAATGACGGCTCTGCAGACGTCGATCCTGCTTCTGGCTCTCCTCAACCTGAGCGCGGCGCTGGTTTGTCCTGATGGAGGCACGTGTGAGGACAGGAACACCTGCTGCAGGAACTCCGCAGGTGGATACAGCTGCTGCCCGCTACCGCATGTGAGTCCCCCCGGGGTCGTGTTGGGGTGA]
[+] EMBL CA590292 [TCCTGCGAAATTTGCCTTTAGGAGCAACGTTAATGTGACAGCTGGACAAACTGCGCCGGACAGGTTCGGAGTATGTACACTTGTGCCTTTTGTTGCTAATACCTGAAGTTCTTCTACTCCAACAAGACAGCTGCTAATAATGACGGCTCTGCAGACGTCGATCCTGCTTCTGGCTCTCCTCAACCTGAGCGCGGCGCTGGTTTGTCCTGATGGAGGCACGTGTGAGGACAGGAACACCTGCTGCAGGAACTCCGCAGGTGGATACAGCTGCTGCCCGCTACCGCATGTGAGTCCCCCCGGGGTCGTGTTGGGGTGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2148#0 ------------------------------------------------------------
consensus_2148#2 -------TCCTGCGAAATTTGCCTTTAGGAGCAACGTTAATGTGACAGCTGGACAAACTG 53
consensus_2148#1 AATATGTCCTGATGGAAAAAGCCGCTGCCAACTGGGCCACACATGCTGCCAGCTAGCCAG 60
consensus_2148#0 ----GGACAGGTGAGGTAGAATAGTACACTTGTGCCTTTTGTTGCTAATACCTGAAGTTC 56
consensus_2148#2 CGCCGGACAGGTTCGG-AGTAT-GTACACTTGTGCCTTTTGTTGCTAATACCTGAAGTTC 111
consensus_2148#1 CGGCGCCTACGGCTGC-TGCCCGCTCCAACAG-GCTGTGTGCTGCAGCGATCACGAGCGC 118
* * * * * * ** * ** * ** *** * * ** *
consensus_2148#0 TTCTACTCCAACAAGACA-GCTGCTA-----ATAATGACGGCTCTGCAG--------ACG 102
consensus_2148#2 TTCTACTCCAACAAGACA-GCTGCTA-----ATAATGACGGCTCTGCAG--------ACG 157
consensus_2148#1 TGCTGCCCTGCAGGCACGCGCTGCGACCTGGAGCACGACGCCTGCGTGTCCGGCGCCACG 178
* ** * * ** ***** * * * **** ** * ***
consensus_2148#0 TCGATCCTGCTTCTG---------GCTCTCCTCAACCTGAGCGCGGCGCTGGTTTGTCCT 153
consensus_2148#2 TCGATCCTGCTTCTG---------GCTCTCCTCAACCTGAGCGCGGCGCTGGTTTGTCCT 208
consensus_2148#1 CCAGTCCCAATGCTGAGGATCGCCGCCGTCCCCGGCGAAGGCGCGACGCCTGTT-GTCCC 237
* *** * *** ** *** * * ***** *** *** ****
consensus_2148#0 GATGGAGG----------CACGTGTGAGGA---------------CAGGAAC---ACCTG 185
consensus_2148#2 GATGGAGG----------CACGTGTGAGGA---------------CAGGAAC---ACCTG 240
consensus_2148#1 AATCAAGATCGACAACAACAAGTGCGACGAGTCCACGACGTGTCCCGGGGACTCCACCTG 297
** ** ** *** ** ** * ** ** *****
consensus_2148#0 CTGCAGGAACTCCGCAGGTGGATACAGCTGCTGCCCGCTACCGCATGCTGAATGTTGCTC 245
consensus_2148#2 CTGCAGGAACTCCGCAGGTGGATACAGCTGCTGCCCGCTACCGCATG-TGAGTCCCCCCG 299
consensus_2148#1 CTGTAGGACGCTAGAAGGAGGCTGGGCCTGTTGCCCGTTGGCGCAGGCTGTGTGCTGTGA 357
*** **** * *** ** * *** ****** * **** * ** *
consensus_2148#0 CGACCAT-CTGCACTGCTGCTACCAGGGGACGCTCTGTGACCTGGAACACCACAAATGTG 304
consensus_2148#2 GGGTCGTGTTGGGGTGA------------------------------------------- 316
consensus_2148#1 CGATCACGTC-CACTGCTGCCCTCACGACACCATCTGTAACCTGG--------------- 401
* * **
consensus_2148#0 TCAACAAAACGGATTCTGTGCCCTGGTTGAGCCGACTTCCTGCCGCCCCTCGGGTCCAGG 364
consensus_2148#2 ------------------------------------------------------------
consensus_2148#1 ------------------------------------------------------------
consensus_2148#0 CTGGGCTGACTGGGGTCATCTGTCCTGATTCTAAGACCATGTGTCCGGATGGCGCCACTT 424
consensus_2148#2 ------------------------------------------------------------
consensus_2148#1 ------------------------------------------------------------
consensus_2148#0 GCTGCCAGCTTCCCAGTGGTTCCATGGGCTGTTGCCTGTTCAGCAACGCCGTGTGCTGCG 484
consensus_2148#2 ------------------------------------------------------------
consensus_2148#1 ------------------------------------------------------------
consensus_2148#0 AGGACAAGCTCCACTGTTGCCCGGAAGGAACGAGGTGTGATCTCGCTCGCTCCAAGTGCG 544
consensus_2148#2 ------------------------------------------------------------
consensus_2148#1 ------------------------------------------------------------
consensus_2148#0 TTTCGCCATCGCAGCAGTGGTTCCCCATGATGCACAAAGTTCCGGCCACCACGAGAGCAG 604
consensus_2148#2 ------------------------------------------------------------
consensus_2148#1 ------------------------------------------------------------
consensus_2148#0 AGCATCCAGAGGCTTCTATAATATGTCCTGATGGAAAAAGCCGCTGCCAACTCGGCCACA 664
consensus_2148#2 ------------------------------------------------------------
consensus_2148#1 ------------------------------------------------------------
consensus_2148#0 CATGCTGCCAGCTAGCCAGCGGCGCCTACGGCTGCTGCCCGCTCCAACAGGCTGTGTGCT 724
consensus_2148#2 ------------------------------------------------------------
consensus_2148#1 ------------------------------------------------------------
consensus_2148#0 GCAGCGATCACGAGCGCTGCTGCCCTGCAGGCACGCGCTGCGACCTG 771
consensus_2148#2 -----------------------------------------------
consensus_2148#1 -----------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |