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Takifugu rubripes
cluster # 2204 cluster # 2204       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2204#0 length = 601 sequences # 3  
consensus_2204#1 length = 487 sequences # 1  

consensusID : consensus_2204#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 601
fasta sequence
                              [AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT-CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGGGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGTCGT]

[+] EMBL CA591183             [AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAAGAAACCTGCCTTTTAAAACGGTGTAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGTCGT]
[+] EMBL BU805062             [  TGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGACGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGATCCTGCCGCAGGAGGAGGAGGACGTGACA                                                                                                                             ]
[+] EMBL CA590164             [                                                            CAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACTGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGAAAAGGAGGTAGTCGAGGAT CTGCCGCAGGAGGAGGAGGACGTGACAACCGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGG                                                                     ]


>consensus_2204#0 AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCAG CAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCC GTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGA CATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGA AACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAGATCTGGAGTCTCTAAAAGA AGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGA GGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGA TGCAAAAGGAAAAGGAGGTAGTCGAGGATCTGCCGCAGGAGGAGGAGGACGTGACAACCG TGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGGGGGCGGAG TCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGTCG T



consensusID : consensus_2204#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 487
fasta sequence
                              [TAATGGCGGACTTCGACTACTACGACGATCGAGATGTGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGG]

[+] EMBL BU805685             [TAATGGCGGACTTCGACTACTACGACGATCGAGATGTGCCTATGGAAGCTTCGGCGGCAGCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCCGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGAAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAAGAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAGAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATGATGCAAAAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAGGTGCTGG]


>consensus_2204#1 TAATGGCGGACTTCGACTACTACGACGATCGAGATGTGCCTATGGAAGCTTCGGCGGCAG CAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGCC GTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGGA CATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAGA AACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAAG AAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCAG AGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGATG ATGCAAAAGGTTATAGAGATGATGATTATATGGGAGGGCGGAGTCGAGGTGGCGGCACAG GTGCTGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2204#0      -AATGGCGGACTTCGACTACTACGACGATCGAGATCGGGCCTATGGAAGCTTCGGCGGCA 59
consensus_2204#1      TAATGGCGGACTTCGACTACTACGACGATCGAGAT-GTGCCTATGGAAGCTTCGGCGGCA 59
                       ********************************** * **********************

consensus_2204#0      GCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGC 119
consensus_2204#1      GCAGAGGCCCCCGCCCTGGAGCTGCTACCTCTGGAGGTCCCAGGAAGCAGAAGGAGCTGC 119
                      ************************************************************

consensus_2204#0      CGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGG 179
consensus_2204#1      CGTCAGAGCCGCCATTCACTGCTTATGTAGGAAACCTGCCTTTTAAAACGGTGCAGGGGG 179
                      ************************************************************

consensus_2204#0      ACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAG 239
consensus_2204#1      ACATTGACCAAATCTTCAAAGAACTCAACATCCGCAGCATCCGATTGGTCAGAGACAAAG 239
                      ************************************************************

consensus_2204#0      AAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCGAAG-ATCTGGAGTCTCTAAAA 298
consensus_2204#1      AAACAGACAGGTTCAAAGGTTTTTGTTATGTTGAATTCTTATTATCTGGAGTCTCTAAAA 299
                      **************************************  *  *****************

consensus_2204#0      GAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCA 358
consensus_2204#1      GAAGCATTGACATATGATGGTGCACTCCTAGAAGAGAGGTCGCTGAGGGTTGACATTGCA 359
                      ************************************************************

consensus_2204#0      GAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGAT 418
consensus_2204#1      GAGGGACGAAAACAGGAACGAGGAGGTGGTGGCAGTGGCGGATTTGGATATAGGAAAGAT 419
                      ************************************************************

consensus_2204#0      GATGCAAAAGGAAAAGGAGGTAGTCGAGGATCTGCCGCAGGAGGAGGAGGACGTGACAAC 478
consensus_2204#1      GATGCAAAAGGTTATAGAGATGAT-GATTATATG-----GGAGGGCGGAGTCGAGGTGGC 473
                      ***********  *  *** *  * **  ** **     *****  *  * ** *    *

consensus_2204#0      CGTGAGGACTTCGACCAGCCAGGAGGAGGTTATAGAGATGATGATTATATGGGGGGGCGG 538
consensus_2204#1      GGCACAGGTGCTGG---------------------------------------------- 487
                       *    *     *                                               

consensus_2204#0      AGTCGAGGTGGCGGCACAGGTGCTGGTCGTCCCAGTGACAGGAGGGGTGCAGGTCCAGGT 598
consensus_2204#1      ------------------------------------------------------------
                                                                                  

consensus_2204#0      CGT 601
consensus_2204#1      ---
                         




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)