These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [ACCCTTTCCTTCAGCTTACAGATGGCAAAAAGATCAAGTGCACGCTAAACGGCCACGAGTTTCCGTGCAACCTGCAGGAGCTTGAGAAGTTCACTCAAGGGAAGAAGTATGAGAAGCTGAGCGCTGCTGCAGACTTCAACTACAGCCAGTATGAGCCACATATCGTGGCAAGCACCAAACAGCCCAACCAGCTCTTCTGTAAACTGACCCTGAGACACCTCAACCGGCAGCCACATCACGTCCTGCGACATATTCACGGGAAACGTTTCAAGAAAGCCCTCTCCAAGTATGAGGACTGCGTGCAGAAAGGGATTGAATTCATCCCAGCTCGACTCATGCAGAAGAGGCCCAAAGACGCCAGGGAGGAAGTCAGTCGGGGGAGGACCTCGAAGCAGGGCAACGGCACGTGGGCGCCCTCTTCGAGCGAGGAGGACGGCGACTCGGAGGACAGCATGAGTGACCTCTACCCCTCCCACCTATTCACGCTAAAAAACCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACGACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGC] [+] EMBL CA329885 [ACCCTTTCCTTCAGCTTACAGATGGCAAAAAGATCAAGTGCACGCTAAACGGCCACGAGTTTCCGTGCAACCTGCAGGAGCTTGAGAAGTTCACTCAAGGGAAGAAGTATGAGAAGCTGAGCGCTGCTGCAGACTTCAACTACAGCCAGTATGAGCCACATATCGTGGCAAGCACCAAACAGCCCAACCAGCTCTTCTGTAAACTGACCCTGAGACACCTCAACCGGCAGCCACATCACGTCCTGCGACATATTCACGGGAAACGTTTCAAGAAAGCCCTCTCCAAGTATGAGGACTGCGTGCAGAAAGGGATTGAATTCATCCCAGCTCGACTCATGCAGAAGAGGCCCAAAGACGCCAGGGAGGAAGTCAGTCGGGGGAGGACCTCGAAGCAGGGCAACGGCACGTGGGCGCCCTCTTCGAGCGAGGAGGACGGCGACTCGGAGGACAGCATGAGTGACCTCTACCCCTCCCACCTATTCACGCTAAAAAACCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACGACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGC] consensusID : consensus_221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence [GCTCTAATTCCAAGCAAACGCATCAGTTTACCGCGTGTTTCCGGTTCATTTTTGGAACGTTGTGCTCCCACAGCCCACCTATTCACGCTAAAAAGCCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACGACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGCACAAAAGCGCAGGGTGGCGGAACGCAGAAGAAACTCCGCAATAACCGCTGGAAATCTGGGCGGG] [+] EMBL FR0056528 [GCTCTAATTCCAAGCAAACGCATCAGTTTACCGCGTGTTTCCGGTTCATTTTTGGAACGTTGTGCTCCCACAGCCCACCTATTCACGCTAAAAAGCCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACGACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGCACAAAAGCGCAGGGTGGCGGAACGCAGAAGAAACTCCGCAATAACCGCTGGAAATCTGGGCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_221#0 ACCCTTTCCTTCAGCTTACAGATGGCAAAAAGATCAAGTGCACGCTAAACGGCCACGAGT 60 consensus_221#1 ------------------------------------------------------------ consensus_221#0 TTCCGTGCAACCTGCAGGAGCTTGAGAAGTTCACTCAAGGGAAGAAGTATGAGAAGCTGA 120 consensus_221#1 ------------------------------------------------------------ consensus_221#0 GCGCTGCTGCAGACTTCAACTACAGCCAGTATGAGCCACATATCGTGGCAAGCACCAAAC 180 consensus_221#1 ------------------------------------------------------------ consensus_221#0 AGCCCAACCAGCTCTTCTGTAAACTGACCCTGAGACACCTCAACCGGCAGCCACATCACG 240 consensus_221#1 ------------------------------------------------------------ consensus_221#0 TCCTGCGACATATTCACGGGAAACGTTTCAAGAAAGCCCTCTCCAAGTATGAGGACTGCG 300 consensus_221#1 ------------------------------------------------------------ consensus_221#0 TGCAGAAAGGGATTGAATTCATCCCAGCTCGACTCATGCAGAAGAGGCCCAAAGACGCCA 360 consensus_221#1 ------------------------------------------------------------ consensus_221#0 GGGAGGAAGTCAGTCGGGGGAGGACCTCGAAGCAGGGCAACGGCACGTGGGCGCCCTCTT 420 consensus_221#1 ---------------------------------GCTCTAATTCCAAGCAAACGCATCAGT 27 ** ** * *** * consensus_221#0 CGAGCGAGGAGGACGGCGACTCGGAGGACAGCATGAGTGACCTCTACCCCTCCCACCTAT 480 consensus_221#1 TTACCGCG--TGTTTCCGGTTC--ATTTTTGGAACGTTGTGCTCC-CACAGCCCACCTAT 82 * ** * * ** ** * * * ** *** * * ********* consensus_221#0 TCACGCTAAAAAACCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACG 540 consensus_221#1 TCACGCTAAAAAGCCCCACAGAAGCGACCACGGGGGGCGACGGGAATGAGGAGGAGGACG 142 ************ *********************************************** consensus_221#0 ACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGC- 599 consensus_221#1 ACTTCCACACGGACGACGGCGAGGACATGGAGGTGGACACGCCGGCGCTGCAGAAACGCA 202 *********************************************************** consensus_221#0 ------------------------------------------------------------ consensus_221#1 CAAAAGCGCAGGGTGGCGGAACGCAGAAGAAACTCCGCAATAACCGCTGGAAATCTGGGC 262 consensus_221#0 --- consensus_221#1 GGG 265 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |