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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2212#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 670 fasta sequence
[ACATTGATGAAGAAAACGACACAGCTTTATGCATTTCAGATCTCAGACCAAACCATTACCACGGAAAACCTGGTCATCCTTGCTATGGCACATGGATAGCATTGTTTCACAATAAAGGTTTTTCAAATCAAGATTACTGGAGGTGGACATGTAAAGGCCTGCATCACAACCCTAACCCTAATCCTGCGATAACAGGAAAACAGGCCACCCACCTCAGGACGACTAAATAATCATGGATATTATTTTCAAGAAGCACAACTCTCTGTTCACGCTCTTACTCCTCCATGTTCCACTTACATGTTTATGTCAGTCCTCCAACAGCAGCTCTACCATAACAGCCACCTCTTCTCCTCCATCAAATGACTCCCTGAAGATACCAGGATGTGGGACTGGACTAGACCCCATGTTTAGGTACCTTTGCGACCGACAGGCAGCATGGGGTATTGTCCTTGAAGTTTTAGCCTCATCAGGCTTCCTGTTTAGCCTGGCCCTCCTAATTGGTCTGCTGGTTTGGTCGATATGGTTCTGTCTTTCATCCAGGAAACAGCGTAGCAGCATTGGAGGCATTGTGGCATCCATGTCCATGTTCCTGTTGGCTACAGCTGGGCTCTTTGCAACAACCTTCTCATTCATCATCCGGCTCACCCCTCAGACATGCCCCACAAGGGTC]
[+] EMBL FR0058750 [ACATTGATGAAGAAAACGACACAGCTTTATGCATTTCAGATCTCAGACCAAACCATTACCACGGAAAACCTGGTCATCCTTGCTATGGCACATGGATAGCATTGTTTCACAATAAAGGTTTTTCAAATCAAGATTACTGGAGGTGGACATGTAAAGGCCTGCATCACAACCCTAACCCTAATCCTGCGATAACAGGAAAACAGGCCACCCACCTCAGGACGACTAAATAATCATGGATATTATTTTCAAGAAGCACAACTCTCTGTTCACGCTCTTACTCCTCCATGTTCCACTTACATGTTTATGTCAGTCCTCCAACAGCAGCTCTACCATAACAGCCACCTCTTCTCCTCCATC ]
[+] EMBL BU807993 [ TGATGAAGAAAACGACACAGCTTTATGCATTTCAGATCTCAGACCAAACCATTACCACACAAAACCTGGTCATCCTTGCTATGGCACATGGATAGCATTGTTTCACAATAAAGGTTTTTCAAATCAAGATTACTGGAGGTGGACATGTAAAGGCCTGCATCACAACCCTAACCCTAATCCTGCGATAACAGGAAAACAGGCCACCCACCTCAGGACGACTAAATAATCATGGATATTATTTTCAAGAAGCACAACTCTCTGTTCACGCTCTTACTCCTCCATGTTCCACTTACATGTTTATGTCAGTCCTCCAACAGCAGCTCTACCATAACAGCCACCTCTTCTCCTCCATCAAATGACTCCCTGAAGATACCAGGATGTGGGACTGGACTAGACCCCATGTTTAGGTACCTTTGCGACCGACAGGCAGCATGGGGTATTGTCCTTGAAGTTTTAGCCTCATCAGGCTTCCTGTTTAGCCTGGCCCTCCTAATTGGTCTGCTGGTTTGGTCGATATGGTTCTGTCTTTCATCCAGGAAACAGCGTAGCAGCATTGGAGGCATTGTGGCATCCATGTCCATGTTCCTGTTGGCTACAGCTGGGCTCTTTGCAACAACCTTCTCATTCATCATCCGGCTCACCCCTCAGACATGCCCCACAAGGGTC]
consensusID : consensus_2212#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 388 fasta sequence
[CATTTCAGATCTCAGACCAAACCATTACCACACAAAACCTGGTCATCCTTGCTATGGCACATGGATAGCATTGTTTCACAATAAAGGTTTTTCAAATCAAGATTACTGGAGGTGGACATGTAAAGGCCTGCATCACAACCCTAACCCTAATCCTGCGATAACAGGTAGGTAGAAGCAGCTTGGTTTTTTTTCTATTTTTGGTGNGCTCGGTCGACCTTTTATGATGGTAATTCTCAAAAGATATCAAAGATTGTTCTTTTATTAGAGGTGGTCCATTCCATTGTCATGGATGTGATACTCACAGCAAACATTGTATGTTCATTTATTACTCTTTTGATATAGATACAAATGCAGGGTATAACTGAGGAAAGTCACTGTAGCTCCATGC]
[+] EMBL FR0058274 [CATTTCAGATCTCAGACCAAACCATTACCACACAAAACCTGGTCATCCTTGCTATGGCACATGGATAGCATTGTTTCACAATAAAGGTTTTTCAAATCAAGATTACTGGAGGTGGACATGTAAAGGCCTGCATCACAACCCTAACCCTAATCCTGCGATAACAGGTAGGTAGAAGCAGCTTGGTTTTTTTTCTATTTTTGGTGGGCTCGGTCGACCTTTTATGATGGTAATTCTCAAAAGATATCAAAGATTGTTCTTTTATTAGAGGTGGTCCATTCCATTGTCATGGATGTGATACTCACAGCAAACATTGTATGTTCATTTATTACTCTTTTGATATAGATACAAATGCAGGGTATAACTGAGGAAAGTCACTGTAGC ]
[+] EMBL FR0058277 [ CAGATCTCAGACCAAACCATTACCACACAAAACCTGGTCATCCTTGCTATGGCACATGGATAGCATTGTTTCACAATAAAGGTTTTTCAAATCAAGATTACTGGAGGTGGACATGTAAAGGCCTGCATCACAACCCTAACCCTAATCCTGCGATAACAGGTAGGTAGAAGCAGCTTGGTTTTTTTTCTATTTTTGGTGNGCTCGGTCGACCTTTTATGATGGTAATTCTCAAAAGATATCAAAGATTGTTCTTTTATTAGAGGTGGTCCATTCCATTGTCATGGATGTGATACTCACAGCAAACATTGTATGTTCATTTATTACTCTTTTGATATAGATACAAATGCAGTGTATAACTGAGGAAAGTCACTGTAGCTCCATGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2212#0 ACATTGATGAAGAAAACGACACAGCTTTATGCATTTCAGATCTCAGACCAAACCATTACC 60
consensus_2212#1 -------------------------------CATTTCAGATCTCAGACCAAACCATTACC 29
*****************************
consensus_2212#0 ACGGAAAACCTGGTCATCCTTGCTATGGCACATGGATAGCATTGTTTCACAATAAAGGTT 120
consensus_2212#1 ACACAAAACCTGGTCATCCTTGCTATGGCACATGGATAGCATTGTTTCACAATAAAGGTT 89
** ********************************************************
consensus_2212#0 TTTCAAATCAAGATTACTGGAGGTGGACATGTAAAGGCCTGCATCACAACCCTAACCCTA 180
consensus_2212#1 TTTCAAATCAAGATTACTGGAGGTGGACATGTAAAGGCCTGCATCACAACCCTAACCCTA 149
************************************************************
consensus_2212#0 ATCCTGCGATAACAGGAAAACAGGCCACCCACCTCAGGACGACTAAATAATCATGGATAT 240
consensus_2212#1 ATCCTGCGATAACAGGTAGGTAGA-------------AGCAGCTTGGTTTTTTTT----C 192
**************** * ** * ** * * *
consensus_2212#0 TATTTTCAAGAAGCACAACTCTCTGTTCACGCTCTTACTCCTCCATGTTCCACTTACATG 300
consensus_2212#1 TATTTTTGGTGNGCTCGGTCGACCTTTTATGATGGTAATTCTCAAA---------AGATA 243
****** ** * * ** * * * ** * *** * * **
consensus_2212#0 TTTATGTCAGTCCTCCAACAGCAGCTCTACCATAACAGCCACCTCTTCTCCTCCATCAAA 360
consensus_2212#1 TCAAAGATTGTTCTTTTATTAGAGGTGGTCCATTCCA--------TTGTCATGGATGTGA 295
* * * ** ** * ** * **** ** ** ** * ** *
consensus_2212#0 TGACTCCCTGAAGATACCAGGATGTGGGACTGGACTAGACCCCATGTTTAGGTACCTTTG 420
consensus_2212#1 T-ACTCACAGCAAACATT-GTATGTTCATTT--ATTACTCTTTTGATATAGATACAAATG 351
* **** * * * * * * **** * * ** * * *** *** **
consensus_2212#0 CGACCGACAGGCAGCATGGGGTATTGTCCTTGAAGTTTTAGCCTCATCAGGCTTCCTGTT 480
consensus_2212#1 CA------GGGTATAACTGAGGAAAGTCACTGTAGCTCCATGC----------------- 388
* ** * * * * * *** ** ** * * *
consensus_2212#0 TAGCCTGGCCCTCCTAATTGGTCTGCTGGTTTGGTCGATATGGTTCTGTCTTTCATCCAG 540
consensus_2212#1 ------------------------------------------------------------
consensus_2212#0 GAAACAGCGTAGCAGCATTGGAGGCATTGTGGCATCCATGTCCATGTTCCTGTTGGCTAC 600
consensus_2212#1 ------------------------------------------------------------
consensus_2212#0 AGCTGGGCTCTTTGCAACAACCTTCTCATTCATCATCCGGCTCACCCCTCAGACATGCCC 660
consensus_2212#1 ------------------------------------------------------------
consensus_2212#0 CACAAGGGTC 670
consensus_2212#1 ----------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |