These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2227#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 710 fasta sequence [AGCGAGCAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGGCGGGTTTGCCAGCGTGCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAAGGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCACAACAATTAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTATTAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCATGAGGCAACCACAGAATGGCCTTGAGCCAACTCAGTCACCTGCCGTGGCCCAGGCAGCAGATAAACCAGACGGCTCCATGACGGCGGTTGCGACGGGAGGTCATTCAGGTC] [+] EMBL CA845919 [ACCGTATAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGCCTGGTTTGCCAGCGTGCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAAGGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCACAACAATTAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTATTAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCATGAGGCAACCACAGAATGGCCTTGAGCCAACTCAGTCACCTGCCGTGGCCCAGGCAGCAGATAAACCAGACGGCTCCATGACGGCGGTTGCGACGGGAGGTCATTCAGGTC] [+] EMBL BU806237 [AGCGAGCAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGGCGGGTTTGCCAGCGTGCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGATAACCCTCAGCGGCCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGTAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAAGGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCACAACAATTAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTATTAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCATGAGGCAACCACAGAATGGCCTTG ] consensusID : consensus_2227#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 511 fasta sequence [TGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGAGAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGGCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAGAGCTTTCAAAAGTGGCGGTGAGCAGAAGATGGAAACTCTTAACAAGGGTGAAGCGGCATTTTATGACGATCTGTACCAACAGTCCATTCACGGCCTTAGGATGGCGAACTTTCGTGCTTCATCCCCAATGACCATAGCAGGCAAAGGCTGATCCAGGACACTGAGGACTGGCAACCGCGCACCGGTACCA] [+] EMBL FR0055447 [TGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGTGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGGCCATCACCTTGGGGCTTCAGGCTGCAGGGTGCAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGCTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGTCCACCATCAGCGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGGTGAGCAGAAGATGGAAACTCTTAACAAGGGTGAAGCGGCATTTTATGACGATCTGTACCAACAGTCCATTCACGGCCTTAGGATGGCGAACTTTCGTGCTTCATCCCCAATGACCATAGCAGGCAAAGGCTGATCCAGGACACTGAGGACTGGCAACCGCGCACCGGTACCA] [+] EMBL FR0062895 [ CCAGCTTTCTCCCTGCTTTGGGCTGTCGGCTGGCCCCTGAGGAGAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATCACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAGGCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTCCATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGCAGCAGAAGACAGCCTCACCCTGACCCTCACAAGAGCT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2227#0 AGCGAGCAGAGGCTGCGGCTCGCCTGTGTCCCAGTGTCGAGGCGGCGGGTTTGCCAGCGT 60 consensus_2227#1 ------------------------------------------------------------ consensus_2227#0 GCACAGAGGTTCTGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTG 120 consensus_2227#1 ------------TGCTCGCCCAAACTTCAGATTCCCCAGCTTTCTCCCTGCTTTGGGCTG 48 ************************************************ consensus_2227#0 TCGGCTGGCCCCTGAGGATAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGCCCATC 180 consensus_2227#1 TCGGCTGGCCCCTGAGGAGAAGGCTATGAACGTTTACTCGGTAACCCTCAGCGGGCCATC 108 ****************** *********************************** ***** consensus_2227#0 ACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAG 240 consensus_2227#1 ACCTTGGGGCTTCAGGCTGCAGGGTGGAAAGGACTTCAGCATGCCCCTCACCGTGTCAAG 168 ************************************************************ consensus_2227#0 GCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTC 300 consensus_2227#1 GCTGACCCCAGGTGGAAAGGCAGCTCAGGCTGGTGTGGGTGTGGGCGACTGGGTGGTGTC 228 ************************************************************ consensus_2227#0 CATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGC 360 consensus_2227#1 CATTAACGACGCCAACGCAGAAGATATGACCCACGTGGAGGCACAGAACACCATCAGAGC 288 ************************************************************ consensus_2227#0 AGCAGAAGACAGCCTCACCCTGACCCTCACAAAAGCTTTCAAAAGTGGCGATGAGCAGAA 420 consensus_2227#1 AGCAGAAGACAGCCTCACCCTGACCCTCACAAGAGCTTTCAAAAGTGGCGGTGAGCAGAA 348 ******************************** ***************** ********* consensus_2227#0 GGGCTCGTTTGTTCCAGCTTCTGTTCAGCCAAAGTACTCCTTTGCTCCCAGCAC-AACAA 479 consensus_2227#1 GA--TGGAAACTCTTAACAAGGGTGAAGC---GGCATTTTATGACGATCTGTACCAACAG 403 * * * * * * ** *** * * * * * * * ** **** consensus_2227#0 TTAACAAGATGGCAAAGCCTTTTACTGCAGGAGACAGTAGTGCCAACGCAGGATTCCCTA 539 consensus_2227#1 TCCATT------CACGGCCT--TAGGATGGCGAACTTTCGTGCTTCATCCCCAATGACCA 455 * * ** **** ** * ** * **** * * * * * consensus_2227#0 TTAAACCTGTGGCCTACTCACCTAAACTTAACACGCCGCACTCGCAGGTCCATGCCAGCA 599 consensus_2227#1 TAGCAGGCAAAGGCTGATCCAGGACACTGAGGAC-TGGCAACCGCGCACCGGTACCA--- 511 * * * ** ** * *** * ** *** *** * * *** consensus_2227#0 TGAGGCAACCACAGAATGGCCTTGAGCCAACTCAGTCACCTGCCGTGGCCCAGGCAGCAG 659 consensus_2227#1 ------------------------------------------------------------ consensus_2227#0 ATAAACCAGACGGCTCCATGACGGCGGTTGCGACGGGAGGTCATTCAGGTC 710 consensus_2227#1 --------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |