These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2233#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 654 fasta sequence [CCGGGCTTTTACCAGATTTGACCGAACCGGTTAAAACTACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTTTGCTATGTAAAACGTCTGTCATACAACACTTTGATTACCAATGTGACTACATGTTTTATTGTGGCTACCAAAACTGTACCGTGTTGGTGTCATGGAAATGTACATTTTCAAATCTTTCAGGCACCGTCAAAATAAAAACATGTATTGTACAAATGTAAGAAATTACGTGATTAAAATACATGTATTTGACT] [+] EMBL CA330835 [CCGGGCTTTTACCACATTTGACCGAACCGGTTAAAACTACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTTTGCTATGTAAAACGTCTGTCATACAACACTTTGATTACCAATGTGACTACATGTTTTATTGTGGCTACCAAAACTGTACCGTGTTGGTGTCATGGAAATGTAC ] [+] EMBL FR0055770 [ CAGATTTGACCGAACCGGTTAAAACTACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGT ] [+] EMBL FR0056319 [ ACTACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTTTGCTATGTAAAACGTCTGTCATACANCACTTTTGATACCAAT ] [+] EMBL CA330459 [ CAACACTTTGATTACCAATGTGACTACATGTTTTATTGTGGCTACCAAAACTGTACCGTGTTGGTGTCATGGAAATGTACATTTTCAAATCTTTCAGGCACCGTCAAAATAAAAACATGTATTGTACAAATGTAAGAAATTACGTGATTAAAATACATGTATTTGACT] consensusID : consensus_2233#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 605 fasta sequence [GTACTGGTGTACAGTATTGGTAATGCTAATAGGCTGGCTTTTGATAAGTACCCACCCAAAGGATCCTGCTCTTTAAAACAGCACACGGTTTAGGGTCTGTTCTTACTAAAGTGCAATGGTTTATCAGCCCAAAGCTACGGATGTCTACAGTCCAGGAGTAGTTTGCAGTTTGCTTTGTCTTTCAGAGTTGGTGTCATTGAAGTTTGGTAAATTTGTACTGTTGTGTTCCTGTAGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTT] [+] EMBL CA341134 [GTACTGGTGTACAGTATTGGTAATGCTAATAGGCTGGCTTTTGATAAGTACCCACCCAAAGGATCCTGCTCTTTAAAACAGCACACGGTTTAGGGTCTGTTCTTACTAAAGTGCAATGGTTTATCAGCCCAAAGCTACGGATGTCTACAGTCCAGGAGTAGTTTGCAGTTTGCTTTGTCTTTCAGAGTTGGTGTCATTGAAGTTTGGTAAATTTGTACTGTTGTGTTCCTGTAGGTCCGTGCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATCAAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGGGCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCCGGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGCCTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATTCTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATCCTGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2233#0 ------------------------------------------------------------ consensus_2233#1 GTACTGGTGTACAGTATTGGTAATGCTAATAGGCTGGCTTTTGATAAGTACCCACCCAAA 60 consensus_2233#0 ------------------------------------------------------------ consensus_2233#1 GGATCCTGCTCTTTAAAACAGCACACGGTTTAGGGTCTGTTCTTACTAAAGTGCAATGGT 120 consensus_2233#0 ----------------CCGGGCTTTTAC----CAGATTTGACCG--AACCGGTTAAAACT 38 consensus_2233#1 TTATCAGCCCAAAGCTACGGATGTCTACAGTCCAGGAGTAGTTTGCAGTTTGCTTTGTCT 180 *** * *** *** * * * * ** consensus_2233#0 ACACAAACTTAAAAGATGTACGCCTGCGCAAAATTTGTGTCCACGCCGGCTCTGGTCCGT 98 consensus_2233#1 TTCAGAGTTGGTGTCATTGAAGTTTGGTAAATTTGTACTGTTGTGTTCCTGTAGGTCCGT 240 * * ** * * ** ** * * * ******* consensus_2233#0 GCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATC 158 consensus_2233#1 GCTGGTTCCCGGGCTCTTTACAGACCCCTCTCTGCCTCTGTGCTGTCCAGGCCTGAGATC 300 ************************************************************ consensus_2233#0 AAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGG 218 consensus_2233#1 AAAACAGAGAGCAGTGTTGCTGTGGTGCCACACAGCCCCCTCTCCCAGGTCACAATGAGG 360 ************************************************************ consensus_2233#0 GCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCC 278 consensus_2233#1 GCCTTCCAGACCAGTGCTGTCAGCAGGGACATTGACACTGCTGCAAAGTTTATTGGTGCC 420 ************************************************************ consensus_2233#0 GGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGC 338 consensus_2233#1 GGAGCTGCCACAGTCGGAGTGGCTGGATCTGGAGCTGGTATTGGGACAGTGTTTGGTAGC 480 ************************************************************ consensus_2233#0 CTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATT 398 consensus_2233#1 CTCATCATTGGCTATGCAAGGAACCCATCTCTGAAGCAGCAGCTGTTTTCATATGCCATT 540 ************************************************************ consensus_2233#0 CTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATC 458 consensus_2233#1 CTGGGGTTTGCTCTTTCTGAAGCCATGGGACTGTTCTGTTTGATGGTTGCTTTCCTTATC 600 ************************************************************ consensus_2233#0 CTGTTTGCTATGTAAAACGTCTGTCATACAACACTTTGATTACCAATGTGACTACATGTT 518 consensus_2233#1 CTGTT------------------------------------------------------- 605 ***** consensus_2233#0 TTATTGTGGCTACCAAAACTGTACCGTGTTGGTGTCATGGAAATGTACATTTTCAAATCT 578 consensus_2233#1 ------------------------------------------------------------ consensus_2233#0 TTCAGGCACCGTCAAAATAAAAACATGTATTGTACAAATGTAAGAAATTACGTGATTAAA 638 consensus_2233#1 ------------------------------------------------------------ consensus_2233#0 ATACATGTATTTGACT 654 consensus_2233#1 ---------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |