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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2257#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[TTGATGTGGCATTCTGAGCAGACTATAAAATACATCAATTAATCAATCAATTAGATTTCTGACCCACAGTGAGAATTTAAAAGTTACCTTATTCTGAATTTTATCAACTTTATTGACAAGAATGTTGTGTGGGGCTGTATGCAACTGATGGATTTCCCTTGATTGCATCAAATCCATATCATAAAATGAAAGTAAGATTGACTCTGCTGAATATACACAAATAACTGCTCTATGTAATATCTTCTAGTGCTGCGGGGATGCTTTTAAGGCCTGCTTTGTCTCCAGGAAGGCTGCAGCTCCTCTGTTTTAATGACCATTAAACCTTTATGTGAAAATGCGATAAATACAATAAGCTGTTTTGCACCAGCCTGCGGTCGACAATGGCCCAGTAGTCGGGCAAAGGTTTCCGTCTCTTTTCCATTTTGTTGTAGATTCTCTTGCTCTCTTTTAATGGTGCACGACAGGAATGTTTGCAGTGTCTCACTTTGTCACGGTGAGCTGAAGCGTCGTGATTGACCATTTTGTCTGCGTCTTTGCTCGCAGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTG]
[+] EMBL CA847127 [TTGATGTGGCATTCTGAGCAGACTATAAAATACATCAATTAATCAATCAATTAGATTTCTGACCCACAGTGAGAATTTAAAAGTTACCTTATTCTGAATTTTATCAACTTTATTGACAAGAATGTTGTGTGGGGCTGTATGCAACTGATGGATTTCCCTTGATTGCATCAAATCCATATCATAAAATGAAAGTAAGATTGACTCTGCTGAATATACACAAATAACTGCTCTATGTAATATCTTCTAGTGCTGCGGGGATGCTTTTAAGGCCTGCTTTGTCTCCAGGAAGGCTGCAGCTCCTCTGTTTTAATGACCATTAAACCTTTATGTGAAAATGCGATAAATACAATAAGCTGTTTTGCACCAGCCTGCGGTCGACAATGGCCCAGTAGTCGGGCAAAGGTTTCCGTCTCTTTTCCATTTTGTTGTAGATTCTCTTGCTCTCTTTTAATGGTGCACGACAGGAATGTTTGCAGTGTCTCACTTTGTCACGGTGAGCTGAAGCGTCGTGATTGACCATTTTGTCTGCGTCTTTGCTCGCAGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTG]
consensusID : consensus_2257#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 565 fasta sequence
[CTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGGGAATCTACATCACTGGCTCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAATTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCCATTTATGGCATCATCATGGCCATCGTGATCAGCAACATGGCCGAGGAATTCAGTGGAACCACTCCTGAAACCATCGGGGCAAGAAATTACCAGGCTGGTTACTCCATGT]
[+] EMBL BU806051 [CTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATACTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGGGAATCTACATCACTGGCTCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAATTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCCATTTATGGCATCATCATGGCCATCGTGATCAGCAACATGGCCGAGGAATTCAGTGGAACCACTCCTGAAACCATCGGGGCAAGAAATTACCAGGCTGGTTACTCCATGT]
[+] EMBL BU807290 [CTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTTTTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGGGAATCTACATCACTGGCTCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAATTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCCATTTATGGCATCATCATGGCCATCGTGATCAGCA ]
[+] EMBL BU806193 [CTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGGGAATCTACATCACTGGCTCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAATTTGGTCAGCATCATCTTCTGTGAAGCTGTAGCCA ]
consensusID : consensus_2257#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 532 fasta sequence
[TGCATCATATGACCCCAGCCAGCTTCCTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGTGAGTAAACCAACAGGAGGGACAGGAAGGATAAAACTGTGAATTAGTGGAGGTTGGAATAGATTCCTCTTTCTTAAAGCTTCAGGAAAAACAGATGCGTAAATGTGGAACCAGAAAACAGGAACATGAGTGTATGTTTGATGGAGCAGCTCA]
[+] EMBL CA590203 [TGCATCATATGACCCCAGCCAGCTTCCTCCTTTGCTCCGTGACATCTGTCGCTCGATTGAGCTTCATTAAACGGCACCGTTTCGTTATATAACGTTACTGGTGTGATTTGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGATGCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTTCTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTTTGATGTGGCATGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGGGCATCGGCCTGGCCATTTCTCTGTCTGTGGTCGGAGCAGCCTGGTGAGTAAACCAACAGGAGGGACAGGAAGGATAAAACTGTGAATTAGTGGAGGTTGGAATAGATTCCTCTTTCTTAAAGCTTCAGGAAAAACAGATGCGTAAATGTGGAACCAGAAAACAGGAACATGAGTGTATGTTTGATGGAGCAGCTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2257#1 -------------------------------------CTCCTTTGCTCCGTGACATCTGT 23
consensus_2257#2 -----------TGCATCATATGACCCCAGCCAGCTTCCTCCTTTGCTCCGTGACATCTGT 49
consensus_2257#0 TTGATGTGGCATTCTGAGCAGACTATAAAATACATCAATTAATCAATCAATTAGATTTCT 60
* * ** * * ** * *
consensus_2257#1 CGCTCG-ATTGAGCTTCATTAAACGGCACCGTTTCG--TTATAT-AACGTTACTGGTGTG 79
consensus_2257#2 CGCTCG-ATTGAGCTTCATTAAACGGCACCGTTTCG--TTATAT-AACGTTACTGGTGTG 105
consensus_2257#0 GACCCACAGTGAGAATTTAAAAGTTACCTTATTCTGAATTTTATCAACTTTATTGACAAG 120
* * * **** * ** * ** * ** *** *** *** ** *
consensus_2257#1 ATT--TGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGAT 137
consensus_2257#2 ATT--TGTTTAAAATTGTGCGAAGGAAATTTAGCTGACCCGGCTGGAGCACCGGATAGAT 163
consensus_2257#0 AATGTTGTGTGGGGCTGTATGCAACTGATGGATTTCCCTTGATTG---CATCAAATCCAT 177
* * *** * *** * * ** * * * * ** ** * ** **
consensus_2257#1 GCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTT 197
consensus_2257#2 GCTGCTAGAGTGGATGATGAACGGACACGCTATTCTGTATACCGGGGTCACTCTGGCCTT 223
consensus_2257#0 ATCA-TAAAATGAAAGTAAGATTGACTC--TGCTGAATATACACAAATAACT---GCTCT 231
** * ** * * * *** * * * ***** * *** ** *
consensus_2257#1 CTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTT 257
consensus_2257#2 CTGGAGCACCATATTAATCGTTGGTATATGCTATACCATCTTTGATCTGGGATTCCGCTT 283
consensus_2257#0 ATGTAATATCTT-CTAGTGCTGCGGGGATGCTTTTAAGGCCT--GCTTTGTCTCCAGGAA 288
** * * * * ** * * * ***** * * * * * * * *
consensus_2257#1 TGATGTGGCATGGTTCCTGACAGAGACGTCCC-CATTCATGTGGGCCTGTCTGGGCATCG 316
consensus_2257#2 TGATGTGGCATGGTTCCTGACAGAGACGTCCC-CATTCATGTGGGCCTGTCTGGGCATCG 342
consensus_2257#0 GGCTGCAGCTCCTCTGTTTTAATGACCATTAAACCTTTATGTGAAAATG-CGATAAATAC 347
* ** ** * * * * * * ** ***** ** * **
consensus_2257#1 GCCTGGCCATTTC---TCTGTCTGTGGTCGG-AGCAGCCTGGGGAATCTACATCACTGGC 372
consensus_2257#2 GCCTGGCCATTTC---TCTGTCTGTGGTCGG-AGCAGCCTGGTGAGTAAAC--------- 389
consensus_2257#0 AATAAGCTGTTTTGCACCAGCCTGCGGTCGACAATGGCCCAGTAGTCGGGCAAA---GGT 404
** *** * * *** ***** * *** * *
consensus_2257#1 TCCAGCATCATTGGTGGTGGCGTAAAGGCTCCACGAATCAAAACCAAGAAT-TTGGTCAG 431
consensus_2257#2 --CAACAGGAGGGACAGGAAGGATAAAACT--GTGAATTAG---TGGAGGT-TGGAATAG 441
consensus_2257#0 TTCCGTCTCTTTTCCATTTTGTTGTAGATTCTCTTGCTCTCTTTTAATGGTGCACGACAG 464
* * * * * **
consensus_2257#1 CATCATCT----TCTGTGAAGCTGTAGCCATTT-ATG--GCATCATCATGGCCATCGTGA 484
consensus_2257#2 ATTCCTCT----TTCTTAAAGCTTCAGGAAAAA-CAGATGCGTAAATGTGGAACCAGAAA 496
consensus_2257#0 GAATGTTTGCAGTGTCTCACTTTGTCACGGTGAGCTGAAGCGTCGTGATTGACCATTTTG 524
* * * * * * * ** * * *
consensus_2257#1 TCAGCAACATGGCCGAGGAATT--CAGTGGAACCACTCCTGAAACCATCGGGGCAAGAAA 542
consensus_2257#2 ACAGGAACATGAGTGTATG-TT--TGATGGAGCAGCTCA--------------------- 532
consensus_2257#0 TCTGCGTCTTTGCTCGCAGGTTCCTGACAGAGACGTCCCCATTCATGTGGGCCTGTCTGG 584
* * * * ** ** *
consensus_2257#1 TTACCAGGCTGGTTACTCCATGT------ 565
consensus_2257#2 -----------------------------
consensus_2257#0 GCATCGGCCTGGCCATTTCTCTGTCTGTG 613
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |