These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2295#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 689 fasta sequence [TTTGGTTTTCAATTACTTTATAGCTCATATTACTGTAGACATGAGGAAAAACCGTCCCATTAACACATGGGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTTAAAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTATGGGATGGACAGATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCT-CTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCACTCTACAAAGTAGCTGCTGTTCTTGGTTTG] [+] EMBL CA331198 [TTTGGTTTTCAATTACTTTATAGCTCATATTACTGGAGACATGAGGAAAAACCGTCCCATTAACACATGGGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTTAAAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTATGGGATGGACAGATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGTATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATATTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGA ACGCTTGAACAGGTCCTGAATGGCTGGACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGGCTCCGGGGGGGGACGTC CAGACGGCCGT ] [+] EMBL CA331258 [ TCAATTACTTTATAGCTCATATTACTGTAGACATGAGGAAAAACCGTCCCATTAACACATGNGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTT AAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTCTGGGATGGACAAATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCT CTGGGGGGGACGTCACAGACGGGCGTCTT ] [+] EMBL CA329300 [ TCAATTACTTTATAGCTCATATTACTGTAGACATGAGGAAAAACCGTCCCATTAACACATGGGNGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTTAAAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTATGGGATGGACAGATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATATTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGTAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGA ATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGT ] [+] EMBL CA329400 [ ATGGGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGTTGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAAAACATTTTT AAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACATCTCTCTGGGATGGACAAATATGCAACAGATGCCACATATACAGACAACATTAACATAGGCATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAAGCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCT CTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCACTCTACAAAGTAGCTGCTGTTCTTGGTTTG] consensusID : consensus_2295#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [GGCTGGTTCCCTTCAAGAACTTTTACTTTCTCTGCATATTTCCATCTTTGGCTTCAGACATTTAAAATAATAGGCACTTTCTGCTCTCAAGCATCTTCCTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGTTACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCTCTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCACTCTACAAAGTAGCTGCTGTTCTTGTTTTGCACATTCAGCATCTGCTCATCCACCTCTTTCATCGACATGGCACCTCTGAAGATGGCAGCAACTGTAAGATATCTTCCATGACGTGGGTCACAAGCTGCCATCATGTTCTTGGCATCAAACATCTGCTGGGTGAGTTCTGGAACTGTCAGTGCTCTGTACAGTTGGCTAACACGGCTGGGTCATGGAACGAAGCCTGGCATGAAAAA] [+] EMBL CA329599 [GGCTGGTTCCCTTCAAGAACTTTTACTTTCTCTGCATATTTCCATCTTTGGCTTCAGACATTTAAAATAATAGGCACTTTCTGCTCTCAAGCATCTTCCTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGTTGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCCATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGCTCTGAGTTACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCCATCTTGAGGCCTCTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCACTCTACAAAGTAGCTGCTGTTCTTGTTTTGCACATTCAGCATCTGCTCATCCACCTCTTTCATCGACATGGCACCTCTGAAGATGGCAGCAACTGTAAGATATCTTCCATGACGTGGGTCACAAGCTGCCATCATGTTCTTGGCATCAAACATCTGCTGGGTGAGTTCTGGAACTGTCAGTGCTCTGTACAGTTGGCTAACACGGCTGGGTCATGGAACGAAGCCTGGCATGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2295#0 TTTGGTTTTCAATTACTTTATAGCTCATATTACTGTAGACATGAGGAAAAACCGTCCCAT 60 consensus_2295#1 ------------------------------------------------------------ consensus_2295#0 TAACACATGGGGGAAAGAACCAATTTATTAAGAGCCCAATATCACAAACACTGTTTGCGT 120 consensus_2295#1 ------------------------------------------------------------ consensus_2295#0 TGGCTCGACTTACAGTCCGCACAGTTGTGACACCCTGTAGCCTCGAACCGATTCAGGAAA 180 consensus_2295#1 ------------------------------------------------------------ consensus_2295#0 AACATTTTTAAAAAAAAACACTTTTAGTGGAAAAAGAAGAGACCTAAAGGAGAGCCACAT 240 consensus_2295#1 ------------------------------------------------------------ consensus_2295#0 CTCTATGGGATGGACAGATATGCAACAGATGCCACATATACAGACAACATTAACATAGGC 300 consensus_2295#1 --------------------------GGCTGGTTCCCTTCAAGA--ACTTTTACTTTCTC 32 * ** * * *** ** ** ** * * consensus_2295#0 ATTATACTGGCTGGCATTTGTCTGAATGAAACAAACACAAAATGAAATTTCTGCTCTCAA 360 consensus_2295#1 TGCATATTTCC--ATCTTTGGCTTCAGACATTTAAAATAATAGGCACTTTCTGCTCTCAA 90 *** * * **** ** * * ** * ** * * * ************* consensus_2295#0 GCATCTTCTTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGT 420 consensus_2295#1 GCATCTTCCTCCTCCTCGTCACCCTCTGCCTCTTCTTCAGCCGTAGCATCCTGATACTGT 150 ******** *************************************************** consensus_2295#0 TGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCC 480 consensus_2295#1 TGATATTCGGACACCAGGTCGTTCATGTTGCTCTCAGCCTCAGTGAACTCCATCTCATCC 210 ************************************************************ consensus_2295#0 ATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGC 540 consensus_2295#1 ATGCCCTCACCAGTATACCAGTGGAGGAAAGCTTTGCGGCGGAACATTGCAGTGAACTGC 270 ************************************************************ consensus_2295#0 TCTGAGATACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCC 600 consensus_2295#1 TCTGAGTTACGCTTGAACAGTTCCTGAATGGCTGTACTATTGCCAATAAAGGTGGAGGCC 330 ****** ***************************************************** consensus_2295#0 ATCTTGAGGCCTCTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCAC 660 consensus_2295#1 ATCTTGAGGCCTCTGGGGGGGACGTCACAGACGGCCGTCTTAACATTGTTGGGAATCCAC 390 ************************************************************ consensus_2295#0 TCTACAAAGTAGCTGCTGTTCTTGGTTTG------------------------------- 689 consensus_2295#1 TCTACAAAGTAGCTGCTGTTCTTGTTTTGCACATTCAGCATCTGCTCATCCACCTCTTTC 450 ************************ **** consensus_2295#0 ------------------------------------------------------------ consensus_2295#1 ATCGACATGGCACCTCTGAAGATGGCAGCAACTGTAAGATATCTTCCATGACGTGGGTCA 510 consensus_2295#0 ------------------------------------------------------------ consensus_2295#1 CAAGCTGCCATCATGTTCTTGGCATCAAACATCTGCTGGGTGAGTTCTGGAACTGTCAGT 570 consensus_2295#0 -------------------------------------------------------- consensus_2295#1 GCTCTGTACAGTTGGCTAACACGGCTGGGTCATGGAACGAAGCCTGGCATGAAAAA 626 |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |