These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2305#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [TCTGGCCTGTCAGGACCACCGAAGGGACGCTAATGTGGAGCAAACGTTAAGTTTATCGAAAATGCGTCATTGGATTCGTCTCCTGTAAAAATGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAATGGCAACCTTTTTGAAGGCATATTTAAGACTCTCAGTTCTCGGTGTGAGTTGGCTGTGGATGCTGTACACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCACGGAGGGAAGACATCACGGACACCATGATTTTCAGCCCTTCAGACCTGGTGATGATGATCTGCAGAGATGTTGACCTCAACTTTGCCACTAGAGACTCCTTTACAGACACCTCTATTGGCTCCAATCGTGTCAATGGAGAACACAAGGAGAAGATTTTGCAGAGATGGGAAGGAGGAGACAGCAATGGGGAAAATTATGATCTGGACAATGATACATCCAATGGCTGGGATGCCAATGAGATGTTTCGTTACAATGAGGTGAAATATGGGGTGACATCAACGAATGATTCTAGTCTT] [+] EMBL CA590359 [TCTGGCCTGTCAGGACCACCGAAGGGACGCTAATGTGGAGCAAACGTTAAGTTTATCGAAAATGCGTCATTGGATTCGTCTCCTGTAAAAATGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAATGGCAACCTTTTTGAAGGCATATTTAAGACTCTCAGTTCTCGGTGTGAGTTGGCTGTGGATGCTGTACACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCACGGAGGGAAGACATCACGGACACCATGATTTTCAGCCCTTCAGACCTGGTGATGATGATCTGCAGAGATGTTGACCTCAACTTTGCCACTAGAGACTCCTTTACAGACACCTCTATTGGCTCCAATCGTGTCAATGGAGAACACAAGGAGAAGATTTTGCAGAGATGGGAAGGAGGAGACAGCAATGGGGAAAATTATGATCTGGACAATGATACATCCAATGGCTGGGATGCCAATGAGATGTTTCGTTACAATGAGGTGAAATATGGGGTGACATCAACGAATGATTCTAGTCTT] consensusID : consensus_2305#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 615 fasta sequence [GAGTCAAGTGAACCTACCGAAAGGTGGTGTTGACTACCCGTAGCAGGTTTTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGATCTTAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAACCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCAGGCGGGAGAAAAACATCCAACGGAACCTCGGGCCCCGGTGCTATGTCTTCCCCAGTTAGCGGCGTCAGCAGTGGCAACAGGACACCGGCCGGGAGGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAATGGCAACCTTTTTGAAGGCATATTTAAGACTCTCAGTTCTCGGTGTGAGTTGGCTGTGGATGCTGTACACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCACGGAGGGAAGACATCACGGACACCATGATTTTCAGCCCTTCAGAC] [+] EMBL CA590668 [GAGTCAAGTGAACCTACCGAAAGGTGGTGTTGACTACCCGTAGCAGGTTTTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGATCTTAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAACCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCAGGCGGGAGAAAAACATCCAACGGAACCTCGGGCCCCGGTGCTATGTCTTCCCCAGTTAGCGGCGTCAGCAGTGGCAACAGGACACCGGCCGGGAGGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAATGGCAACCTTTTTGAAGGCATATTTAAGACTCTCAGTTCTCGGTGTGAGTTGGCTGTGGATGCTGTACACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCACGGAGGGAAGACATCACGGACACCATGATTTTCAGCCCTTCAGAC] consensusID : consensus_2305#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 429 fasta sequence [TTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGAGCGGAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAAGGGAGCTTAAGGATAAAAGCTAATGCTAACTGAGCTAGTCTTTGCTAAACAATTACACGGAAACTCGNGTCACTTTATTATTCATTTTATTTGACAGAATAATCGTGGCTACCAAGTAGGTGGAACATATTTACGACATATGTTATATATCATANATAGAGTTAGTTGTTTTGCCTTTATCATAGGCCACAAGCGGGAGCCAGATTAGCAACAGTCGCCGGGTATTGGAGGTACGCCGGCTCCTGCATTATTGGCTGAAGATAGTTCCCCTCTTAAAAACAG] [+] EMBL FR0063915 [TTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGTCAACTGACAGTAACTGTAAGAGCGGAAATTCTATCGGAAAGGTCAGCTGTGCCGCAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAAGGGAGCTTAAGGATAAAAGCTAATGCTAACTGAGCTAGTCTTTGCTAAACAATTACACGGAAACTCGTGTCACTTTATTATTCATTTTATTTGACAGAATAATCGTGGCTACCAAGTAGGTGGAACATATTTACGACATATGTTATATATCATANATAGAGTTAGTTGTTTTGCCTTTATCATAGGCCACAAGCGGGAGCCAGATTAGCAACAGTCGCCGGGTATTGGAGGTACGCCGGCTCCTGCATTATTGGCTGAAGATAGTTCCCCTCTTAAAAACAG] [+] EMBL FR0061428 [ TTTTAGGCAACTGACAGTAACTGTAAGATCGGAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGGAGGGAAAGCCCACGAAGTGAGCTTAAGGATAAAAGCTAATGCTAACTGAGCTAGTCTTTGCTAAACAATTACACGGAAACTCGNGTCACTTTATTATTCATTTTATTTGACAGAATAATCGTGGCTACCAAGTAGGTGGAACATATTTACGACATATGTTATATATCATAAATAGAGTTAGTTGTTTTGCCTTTATCATAGGCCACAAGCGGt ] consensusID : consensus_2305#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [GGTTTTCAGTTTGAAACCTGGAAAATCTAATTTTTTGAGCAACTGACAGTAACTGTAAGATCTTACACTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGCCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCAGGCGGGAGAAAAACATCCAACGGAACCTCGGGCCCCGGTGCTATGTCTTCCCCAGTTAGCGGCGTCAGCAGTGGCAACAGGACACCGTCCGGGAGGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGGGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGGGGGTTCCACCTGTGACATCAGGGTAAAGAAATGGCATCCTTTTT] [+] EMBL FR0060122 [GGTTTTCAGTTTGAAACCTGGAAAATCTAATTTTTTGAGCAACTGACAGTAACTGTAAGATCTTACACTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGCCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCAGGCGGGAGAAAAACATCCAACGGAACCTCGGGCCCCGGTGCTATGTCTTCCCCAGTTAGCGGCGTCAGCAGTGGCAACAGGACACCGTCCGGGAGGAATCGATCCTCTGCAAAGCCGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGGGTACAACAATGCTAGAATGCTCCATTTCCTTACAGCTGTTGGGGGTTCCACCTGTGACATCAGGGTAAAGAAATGGCATCCTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2305#1 GAGTCAAGTGAACCTACCGAAAGGTGGTGTTGACTACCCGTAGCAGGTTTTCAGTAAGAA 60 consensus_2305#3 ---------------------------------------------GGTTTTCAGTTTGAA 15 consensus_2305#0 ------------------------------------------------------------ consensus_2305#2 ------------------------------------------------------------ consensus_2305#1 ACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGATCTTAAATTCTATCG 120 consensus_2305#3 ACCTGGAAAATCTAATTTTTTGAGCAACTGACAGTAACTGTAAGATCTTACACTCTATCG 75 consensus_2305#0 ------------------------------------------------------------ consensus_2305#2 ------------------------------------------------------------ consensus_2305#1 GAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGGGTGAGAGGATATTAAATCCCGG 180 consensus_2305#3 GAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGACGG---------------------- 113 consensus_2305#0 ------------------------------------------------------------ consensus_2305#2 ------------------------------------------------------------ consensus_2305#1 AGGGAAAGCCCACGAACCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCA 240 consensus_2305#3 ----------------CCTTGTGCTTCGCAATGCTGAAACAACAACAGCAACCCGGCTCA 157 consensus_2305#0 ---------------------------------------------------------TCT 3 consensus_2305#2 ------------------------------------------------------------ consensus_2305#1 GGCGGGAGAAAAACATCCAACGG--AACCTCG---GGCCCCGGTGCTATGTCTTCCCCAG 295 consensus_2305#3 GGCGGGAGAAAAACATCCAACGG--AACCTCG---GGCCCCGGTGCTATGTCTTCCCCAG 212 consensus_2305#0 GGCCTGTCAGGACCACCGAAGGG--ACGCTAATGTGGAGCAAACGTTAAGTTTATCGAAA 61 consensus_2305#2 -TTCAGTAAGAAACCTGGAAAATCTAATTTTTTAGGCAACTGACAGTAACTGTAAGAGCG 59 * * * * ** * * * * ** * * consensus_2305#1 TTAGCGGCGTCAGCAGTGGCAACAGGACACCGGCCGGGAGGAATCGATCCTCTGCAAAGC 355 consensus_2305#3 TTAGCGGCGTCAGCAGTGGCAACAGGACACCGTCCGGGAGGAATCGATCCTCTGCAAAGC 272 consensus_2305#0 AT----GCGTCATTGG-----ATTCGTCTCCTGTAAAAATGAATCGATCCTCTGCAAAGC 112 consensus_2305#2 GAAATTCTATCGGAAAGGTCAGCTGTGCCGGAGTAAAGGCGACTCGA-CGGGTGAGAGGA 118 ** * ** **** * ** * * consensus_2305#1 CGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAG--AATGCTCCA 413 consensus_2305#3 CGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGGGTACAACAATGCTAG--AATGCTCCA 330 consensus_2305#0 CGTCATTCCAGTCATCTCCGGTGTTTGAGGGCGTGTACAACAATGCTAG--AATGCTCCA 170 consensus_2305#2 TATTAAATCCCGGAGGGAAAGCCCACGAAGG-GAGCTTAAGGATAAAAGCTAATGCTAAC 177 * * * * * ** ** * * ** ** ** ****** consensus_2305#1 TTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAA-TGGCAACCTT- 471 consensus_2305#3 TTTCCTTACAGCTGTTGGGGGTTCCACCTGTGACATCAGGGTAAAGAAATGGCATCCTT- 389 consensus_2305#0 TTTCCTTACAGCTGTTGTGGGTTCCACCTGTGACATCAGGGTAAAGAA-TGGCAACCTT- 228 consensus_2305#2 TGAGCTAGTCTTTGCTAAACAATT-ACACGGAAACTCGNGTCACTTTATTATTCATTTTA 236 * ** ** * * ** * * ** * * * * ** consensus_2305#1 TTTGAAGGCATATTTAAGACTCTCA-GTTCTCGGTGTGAGTTGGCTGTGGATGCTGTA-- 528 consensus_2305#3 TTT--------------------------------------------------------- 392 consensus_2305#0 TTTGAAGGCATATTTAAGACTCTCA-GTTCTCGGTGTGAGTTGGCTGTGGATGCTGTA-- 285 consensus_2305#2 TTTGACAGAATAATCGTGGCTACCAAGTAGGTGGAACATATTTACGACATATGTTATATA 296 *** consensus_2305#1 -CACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCA-CGGAGGGAAGAC--AT 584 consensus_2305#3 ------------------------------------------------------------ consensus_2305#0 -CACAAACGCAATGAGGAGGACAGCTCATTGTCTACTCCACCA-CGGAGGGAAGAC--AT 341 consensus_2305#2 TCATANATAGAGTTAGTTGTTTTGCCTTTATCATAGGCCACAAGCGGGAGCCAGATTAGC 356 consensus_2305#1 CACGGACACCATGATTTTCAGCCCTTCAGAC----------------------------- 615 consensus_2305#3 ------------------------------------------------------------ consensus_2305#0 CACGGACACCATGATTTTCAGCCCTTCAGACCTGGTGATGATGATCTGCAGAGATGTTGA 401 consensus_2305#2 AACAGTCGCCGGGTATTGGAGGTACGCCGGCTCCTGCATTATTGGCTGAAGATA-GTTCC 415 consensus_2305#1 ------------------------------------------------------------ consensus_2305#3 ------------------------------------------------------------ consensus_2305#0 CCTCAACTTTGCCACTAGAGACTCCTTTACAGACACCTCTATTGGCTCCAATCGTGTCAA 461 consensus_2305#2 CCTCTTAAAAACAG---------------------------------------------- 429 consensus_2305#1 ------------------------------------------------------------ consensus_2305#3 ------------------------------------------------------------ consensus_2305#0 TGGAGAACACAAGGAGAAGATTTTGCAGAGATGGGAAGGAGGAGACAGCAATGGGGAAAA 521 consensus_2305#2 ------------------------------------------------------------ consensus_2305#1 ------------------------------------------------------------ consensus_2305#3 ------------------------------------------------------------ consensus_2305#0 TTATGATCTGGACAATGATACATCCAATGGCTGGGATGCCAATGAGATGTTTCGTTACAA 581 consensus_2305#2 ------------------------------------------------------------ consensus_2305#1 ------------------------------------------- consensus_2305#3 ------------------------------------------- consensus_2305#0 TGAGGTGAAATATGGGGTGACATCAACGAATGATTCTAGTCTT 624 consensus_2305#2 ------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |