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These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2359#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 744 fasta sequence
[CAAACAGCGTTGAAAACCCATAAATAGAGAATCATGGAGGAGAAAAGGTTGAGTGTGGGACGAGAGGATAAGAC-AGAGAAGAGCAAACAGGGTGGCAACAAAGGCAAATGTGGTTCGTGTTGTCATCACAGATCCAGAGAAAATGATACAATGGCTGTCCCTCCTGGATTCTCAGATTTGGGCAAATCTGCCAAAGACATCTTTAACAAAGGCTTCGGTTACGGCGTTCTGAAGCTGGATGTCAAGACCAAGTCCCAGAGTGGTGTGATGGAGTTTGCCACCTCTGGCTCCAGCAACACTGACACAGGAAAGTCTGGGGGCCACCTCGAGACCAAGTACAAAATGAAGGAGCTGGGCCTCAACTTCAGTCAGAAAT-GGAACACTAACAACACTCTGACCACTGAGGTCACCATGGAGGACCAGCTGGCTAAAGGGCTGAAGCTCGGTCTGGACACATCATTTGTGCCCAACACTGGGAAGAAAAGTGCTAAACTGAAGACAAGCTACAAGCGCGACTTTGTCAACGTGGGGTGCGACCTTGACTTCGACATGGCCGGCCCCACCATCCAAGCAGCTGCCGTTCTGGGCTACGAGGGCTGGCTGGCCGGCTACCAGTTAGCGTTTGACACCGCCAAATCCACACTGACTCAGAACAACTTTGCCTTTGGTTACAGAGCCGGCGACTTTCAGCTTCACACCAGCGTTAATGATGGCACAGAGTTCGGTGGCTCCGTTTATCAGAAG]
[+] EMBL FR0063160 [CAAACAGCGTTGAAAACCCATAAATAGAGAATCATGGAGGAGAAAAGGTTGAGTGTGGGACGAGAGGATAAGAC AGAAAAGAGCAAACAGGGTGGCAACAAAGGCAAATGTGGTTCGTGTTGTCATCACAGATCCAGAGAAAATGATACAATGGCTGTCCCTCCTGGATTCTCAGATTTGGGCAAATCTGCCAAAGACATCTTTAACAAAGGCTTCGGTTACGGCGTTCTGAAGCTGGATGTCAAGACCAAGTCCCAGAGTGGTGTGATGGAGTTTGCCACCTCTGGCTCCAGCAACACTGACACAGGAAAGTCTGGGGGCCACCTCGAGACCAAGTACAAAATGAAGGAGCTGGCCCTCAACTTCAGTCAGAAA ]
[+] EMBL FR0063176 [ AGAGAATCATGGAGGAGAAAAGGTTGAGTGTGGGACAAGAGGATAAGACGAGAGAAGAGCAAACAGGGTGGCAACAAAGGCAAATGTGGTTCGTGTTGTCATCACAGATCCAGAGAAAATGATACAATGGCTGTCCCTCCTGGATTCTCAGATTTGGGCAAATCTGCCAAAGACATCTTTAACAAAGGCTTCGGTTACGGCGTTCTGAAGCTGGATGTCAAGACCAAGTCCCAGAGTGGTGTGATGGAGTTTGCCACCTCTGGCTCCAGCAACACTGACACAGGATAGTCTGGGGGCCACCTCGAGACCCAATACAAAATGAAGGAGCTGGGCCTCAACTTCAGTCAAAAATGGGAACATTAA ]
[+] EMBL CA590864 [ aACCCATAAATAGAGATACAATGGCTGTCCCTCCTGGATTCTCAGATTTGGGCAAATCTGCCAAAGACATCTTTAACAAAGGCTTCGGTTACGGCGTTCTGAAGCTGGATGTCAAGACCAAGTCCCAGAGTGGTG TGGAGTTTGCCACCTCTGGCTCCAGCAACACTGACACAGGAAAGTCTGGGGGCCACCTCGAGACCAAGTACAAAATGAAGGAGCTGGGCCTCAACTTCAGTCAGAAAT GGAACACTAACAACACTCTGACCACTGAGGTCACCATGGAGGACCAGCTGGCTAAAGGGCTGAAGCTCGGTCTGGACACATCATTTGTGCCCAACACTGGGAAGAAAAGTGCTAAACTGAAGACAAGCTACAAGCGCGACTTTGTCAACGTGGGGTGCGACCTTGACTTCGACATGGCCGGCCCCACCATCCAAGCAGCTGCCGTTCTGGGCTACGAGGGCTGGCTGGCCGGCTACCAGTTAGCGTTTGACACCGCCAAATCCACACTGACTCAGAACAACTTTGCCTTTGGTTACAGAGCCGGCGACTTTCAGCTTCACACCAGCGTTAATGATGGCACAGAGTTCGGTGGCTCCGTTTATCAGAAG]
consensusID : consensus_2359#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[TTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTCCCCTACCCGGGGACCATATATTAAATTGATTTTTGGAACAGGGAGATGGAATAGGGGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTATCTCCAGGAACGGTGCACCACCTTCACTCCGCTCCGCTGCAGCAAACAGCGTTGAAAACCCATAAATAGAGATACAATGGCTGTCCCTCCTGGATTCTCAGATTTGGGCAAATCTGCCAAAGACATCTTTAACAAAGGCTTCGGTTACGGCGTTCTGAAGCTGGATGTCAAGACCAAGTCCCAGAGTGGTGTGGAGTTTGCCACCTCTGGCTCCAGCAACACTGACACAGGAAAGTCTGGGGGCCACCTCGAGACCAAGTACAAAATGAAGGAGCTGGGCCTCAACTTCAGTCAGAAATGGAACACTAACAACACTCTGACCACTGAGGTCACCATGGAGGACCAGCTGGCTAAAGGGCTGAAGCTCGGTCTGGACACATCATTTGTGCCCAACACTGGGAAGAAAAGTGCTAAACTGAAGACAAGCTACAAGCGCGACTTTGTCAACGTGGGGTGCGACCTTGACTTCGAC]
[+] EMBL CA590588 [TTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTCCCCTACCCGGGGACCATATATTAAATTGATTTTTGGAACAGGGAGATGGAATAGGGGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTATCTCCAGGAACGGTGCACCACCTTCACTCCGCTCCGCTGCAGCAAACAGCGTTGAAAACCCATAAATAGAGATACAATGGCTGTCCCTCCTGGATTCTCAGATTTGGGCAAATCTGCCAAAGACATCTTTAACAAAGGCTTCGGTTACGGCGTTCTGAAGCTGGATGTCAAGACCAAGTCCCAGAGTGGTGTGGAGTTTGCCACCTCTGGCTCCAGCAACACTGACACAGGAAAGTCTGGGGGCCACCTCGAGACCAAGTACAAAATGAAGGAGCTGGGCCTCAACTTCAGTCAGAAATGGAACACTAACAACACTCTGACCACTGAGGTCACCATGGAGGACCAGCTGGCTAAAGGGCTGAAGCTCGGTCTGGACACATCATTTGTGCCCAACACTGGGAAGAAAAGTGCTAAACTGAAGACAAGCTACAAGCGCGACTTTGTCAACGTGGGGTGCGACCTTGACTTCGAC]
consensusID : consensus_2359#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence
[GGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTCCCCTACCCGGGGACCATATATTAGATCTCAGATCCATATCCAAAAGGCCTGTGGATCCGATAACTATTGTCACAGTAATCTGCAGATGAGAGCCCATTTCACAGACGACCACCAGAGGCCACTCCCCACGCAGAACAACAGCCAGATTTTGAGCATCAACGGCAGTATTGACCAACTGTACCTGGAGGTTAATATCAGCAACAGTCCAACACAGGGCCAACCAGCAGAGGACGCTCACAACTCCCTCCTAAACGGTAGCATCCC]
[+] EMBL FR0062586 [GGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTCCCCTACCCGGGGACCATATATTAGATCTCAGATCCATATCCAAAAGGCCTGTGGATCCGATAACTATTGTCACAGTAATCTGCAGATGAGAGCCCATTTCACAGACGACCACCAGAGGCCACTCCCCACGCAGAACAACAGCCAGATTTTGAGCATCAACGGCAGTATTGACCAACTGTACCTGGAGGTTAATATCAGCAACAGTCCAACACAGGGCCAACCAGCAGAGGACGCTCACAACTCCCTCCTAAACGGTAGCATCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2359#0 ------------------------------------------------------------
consensus_2359#1 TTTGGCTAAGATCAAGTGTAGTATCTGTTCTTATCAGTTTAATATCTGATACGTCCCCTA 60
consensus_2359#2 ------------------------------------------------------------
consensus_2359#0 ----CAAACAGCGTTGAAAACCCATAAATAGAGAATCATGGAGGAGAAAAGGTTGAGTGT 56
consensus_2359#1 CCCGGGGACCATATATTAAATTGATTTTTGGAACAGGGAGATGGAATAGGGGCTTGCTCC 120
consensus_2359#2 ------------------------------------------------------------
consensus_2359#0 GGG------ACGAGAGGATAAGACAGAGAAGAGCAAACAGGG-TGGCA-ACAAAGGCAAA 108
consensus_2359#1 GTCCACTCCACGCATCGACCTGGTATTGCAGTATCTCCAGGAACGGTGCACCACCTTCAC 180
consensus_2359#2 ------------------------------------------------------------
consensus_2359#0 TGTGGTTCG-TGTTGT------CATCACAGATCCAGAGAAAATGATACAATGGCTGTCCC 161
consensus_2359#1 TCCGCTCCGCTGCAGCAAACAGCGTTGAAAACCCATAAATAGAGATACAATGGCTGTCCC 240
consensus_2359#2 -------------------------------------------------------GGCTA 5
* *
consensus_2359#0 TCCTGGATTCTCAGATTTGGGCAAATCTGCCAAAGACATCTTTAACAAAGGCTTCGGTTA 221
consensus_2359#1 TCCTGGATTCTCAGATTTGGGCAAATCTGCCAAAGACATCTTTAACAAAGGCTTCGGTTA 300
consensus_2359#2 AGATCAAGTGTAGTATCTGTTCTTATCAGTTTA--ATATCTG----ATACGTCCCCTACC 59
* * * * ** ** * *** * * * **** * * * *
consensus_2359#0 CGGCGTTCTGAAGCTGGATGTCAAGACCAAGTCCCAGAGTGGTGTGATGGAGTTTGCCAC 281
consensus_2359#1 CGGCGTTCTGAAGCTGGATGTCAAGACCAAGTCCCAGAGTGGTGTG---GAGTTTGCCAC 357
consensus_2359#2 CGGGGACCATATATTAGATCTCAGATCCATATCCAAAAGGCCTGTG----GATCCGATAA 115
*** * * * * *** *** *** *** * ** **** * * *
consensus_2359#0 CTCTGGCTCCAGCAACACTGACACAGGAAAGTCTGGGGGCCACCTCGAGACCAAGTACAA 341
consensus_2359#1 CTCTGGCTCCAGCAACACTGACACAGGAAAGTCTGGGGGCCACCTCGAGACCAAGTACAA 417
consensus_2359#2 CTATTGTCACAGTAAT-CTG-CAGATGAGAGCC-------CATTTCACAGACGACCACCA 166
** * * *** ** *** ** * ** ** * ** ** * * ** *
consensus_2359#0 AATGAAGGAGCTGGGCCTCAACTTCAGTCAGAAATGGAACACTAACAACACTCTGACCAC 401
consensus_2359#1 AATGAAGGAGCTGGGCCTCAACTTCAGTCAGAAATGGAACACTAACAACACTCTGACCAC 477
consensus_2359#2 GAGGCCACTCCCCACGCAGAACAACAGCCAGATTTTGAGCATCAACGGCAGTATTG--AC 224
* * * * *** *** **** * ** ** *** ** * * **
consensus_2359#0 TGAGGTCACCATGGAGGACCAGCTGGCTAAAGGGCTGAAGCTCGGTCTGGACACATCATT 461
consensus_2359#1 TGAGGTCACCATGGAGGACCAGCTGGCTAAAGGGCTGAAGCTCGGTCTGGACACATCATT 537
consensus_2359#2 CAACTGTACC-TGGAGGTTAATATCAGCAACAGTCCAACACAGGGCCAACCAGCAGAGGA 283
* *** ****** * * ** * * * * ** * **
consensus_2359#0 TGTGCCCAACACTGGGAAGAAAAGTGCTAAACTGAAGACAAGCTACAAGCGCGACTTTGT 521
consensus_2359#1 TGTGCCCAACACTGGGAAGAAAAGTGCTAAACTGAAGACAAGCTACAAGCGCGACTTTGT 597
consensus_2359#2 CGCTCACAACTCCCTCCTAAACGGTAGCATCCC--------------------------- 316
* * **** * ** ** * *
consensus_2359#0 CAACGTGGGGTGCGACCTTGACTTCGACATGGCCGGCCCCACCATCCAAGCAGCTGCCGT 581
consensus_2359#1 CAACGTGGGGTGCGACCTTGACTTCGAC-------------------------------- 625
consensus_2359#2 ------------------------------------------------------------
consensus_2359#0 TCTGGGCTACGAGGGCTGGCTGGCCGGCTACCAGTTAGCGTTTGACACCGCCAAATCCAC 641
consensus_2359#1 ------------------------------------------------------------
consensus_2359#2 ------------------------------------------------------------
consensus_2359#0 ACTGACTCAGAACAACTTTGCCTTTGGTTACAGAGCCGGCGACTTTCAGCTTCACACCAG 701
consensus_2359#1 ------------------------------------------------------------
consensus_2359#2 ------------------------------------------------------------
consensus_2359#0 CGTTAATGATGGCACAGAGTTCGGTGGCTCCGTTTATCAGAAG 744
consensus_2359#1 -------------------------------------------
consensus_2359#2 -------------------------------------------
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| Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |