These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2360#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 682 fasta sequence [TTATATCCTAACAATGCATGTCAACGAAATGCTCGCGCCAAGGAAGAGTTTGTATCGCTGGAAAGCTAAAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTACCGGACACGTTATTTTTTTTGCGATTTGGACACACCGATGATATTTGTCCACTGCAATTGAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGGAAATTAGTTGGAGGAAACGTCGCTTGGTTCGTATTCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGTTTGCACGACGTCACCAATGCGACCATGGGAAATAGCAGTAAATAGGCTGCCACCAACAGCCCCCTTAAATCCAAGGAGGTTCCTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCAGGAGAAGCCCACCAGAGCGACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGAACTTCCATCATCTGATTTTCTCCCAACACCACCCACAGGTTCCTTTAGATGAGTCCAGACAGTACAACCACACCAGCACACCACCACGCATGCTTCACCCCGCTGCTCCCCCGCCCCACCAGAGCCCCATCATGGTGGATCTACA] [+] EMBL CA332884 [TTATATCCTAACAATGCATGTCAACGAAATGCTCGCGCCAAGGAAGAGTTTGTATCGCTGGAAAGCTAAAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTACCGGACACGTTATTTTTTTTGCGATTTGGACACACCGATGATATTTGTCCACTGCAATTGAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGGATTTTTTTTGGAGGAAACGTCGCTTGGTT ] [+] EMBL CA590647 [ GAGTTTGTATCGCTGGAAAGCTAAAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTACCGGACACGTTATTTTTTTTGCGATTTGGACACACCGATGATATTTGTCCACTGCAATTGAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGGAAATTAGTTGGAGGAAACGTCGCTTGGTTCGTATTCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGTTTGCACGACGTCACCAATGCGACCATGGGAAATAGCAGTAAATAGGCTGCCACCAACAGCCCCCTTAAATCCAAGGAGGTTCCTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCANGAGAAGCCCACCAGAGCGACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGAACTTCCATCATCTGATTTTCTCCC ACACCACCCCCCGGTTCCCTTAAATGGGTCCCGACAGTAC ACCACCGCAGGGC CCGCCACGCGTG ] [+] EMBL CA590210 [ AAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTACCGGACACGTTATTTTTTTTGCGATTTGGACACACCGATGATATTTGTCCACTGCAATTGAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGGAAATTAGTTGGAGGAAACGTCGCTTGGTTCGTATTCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGTTTGCACGACGTCACCAATGCGACCATGGGAAATAGCAGTAAATAGGCTGCCACCAACAGCCCCCTTAAATCCAAGGAGGTTCCTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCAGGAGAAGCCCACCAGAGCGACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGAACTTCCATCATCTGATTTTCTCCCAACACCACCCACAGGTTCCTTTAGATGAGTCCAGACAGTACAACCACACCAGCACACCACCACGCATGCTTCACCCCGCTGCTCCCCCG ] [+] EMBL FR0060175 [ CTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCAGGAGAAGCCCACCAGAGCGACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGAACTTCCATCATCTGATTTTCTCCCAACACCACCCACAGGTTCCTTTAGATGAGTCCAGACAGTACAACCACACCAGCACACCACCACGCATGCTTCACCCCGCTGCTCCCCTGCCCCACCAGAGCCCCATCATGGTGGATCTACA] consensusID : consensus_2360#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [GTAATTTCATGTCTGACAACTAATCTTCGACAAAGGGTGAAAATTTGAAGTGCTAGCAGGCGACAAAGCCGCGAAACACCCGGGTGGTTCGGCCCAGTCGACCGAAGCGTTGACGCTGAGCACCTTTTTTACGGCAGTGGTGAGACCCACGGAATGTTCCACACGGGAACAGCTGACCAGGATGCCGCACTTAACCTGACGAGATGTGAACATTGCAAGGCAAATAACAGCGATCAGATGCTCGCATATTAACAATCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGGTTGCACGACGTCACCAATGCGAC] [+] EMBL FR0060404 [GTAATTTCATGTCTGACAACTAATCTTCGACAAAGGGTGAAAATTTGAAGTGCTAGCAGGCGACAAAGCCGCGAAACACCCGGGTGGTTCGGCCCAGTCGACCGAAGCGTTGACGCTGAGCACCTTTTTTACGGCAGTGGTGAGACCCACGGAATGTTCCACACGGGAACAGCTGACCAGGATGCCGCACTTAACCTGACGAGATGTGAACATTGCAAGGCAAATAACAGCGATCAGATGCTCGCATATTAACAATCAGGGTTACGACAATCAGAGGCAACATACAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGGTTGCACGACGTCACCAATGCGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2360#0 TTATATCCTAACAATGCATGTCAACGAAATGCTCGCGCCAAGGAAGAGTTTGTATCGCTG 60 consensus_2360#1 --GTAATTTCA---TGTCTGACAACTAATCTTCGACAAAGGGTGAAAATTTGAAGTGCTA 55 ** * * ** ** **** ** * * * * **** * *** consensus_2360#0 GAAAGCTAAAGCTTCATTTGCACGTCTTTAACTCCATGTCCTGCTCCGACGAAGCCGTTA 120 consensus_2360#1 GCAGGCGACAAAGCCGC--GAAACACCCGGGTGGTTCGGCCCAGTCGACCGAAGC-GTTG 112 * * ** * * * * * * * ** ** ****** *** consensus_2360#0 CCGGACACGTTATTTTTTTTGCGATT-TGGACACACCGATGATATTTGTCCACTGCAATT 179 consensus_2360#1 ACG--CTGAGCACCTTTTTTACGGCAGTGGTGAGACCCACGGAATGT-TCCAC----ACG 165 ** * * ****** ** *** * *** * * ** * ***** * consensus_2360#0 GAGAGCGCGTGTCAGCTTGCTAGCCATAGCAAGCTAATCGCAGCGACATTGTTGG--AAA 237 consensus_2360#1 GGAACAGCTGACCAGGATGCCGCACTTAACCTGACGAG-ATGTGAACATTGCAAGGCAAA 224 * * ** *** *** * ** * * * ****** * *** consensus_2360#0 TTAGTTGGAGGAAACGTCGCTTGGTTCGTATTCAGGGTTACGACAATCAGAGGCAACATA 297 consensus_2360#1 TAACAGCGATCAGATGCTCGCATATTAACAATCAGGGTTACGACAATCAGAGGCAACATA 284 * * ** * * * ** * ***************************** consensus_2360#0 CAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGTTTGCACGACGTCAC 357 consensus_2360#1 CAAGTGCCTCCTCTGTACAGTTTTCCTTTCCCAGAGTGTGACTCGGTTGCACGACGTCAC 344 ********************************************* ************** consensus_2360#0 CAATGCGACCATGGGAAATAGCAGTAAATAGGCTGCCACCAACAGCCCCCTTAAATCCAA 417 consensus_2360#1 CAATGCGAC--------------------------------------------------- 353 ********* consensus_2360#0 GGAGGTTCCTTGGAGAGCCCTGCAACGCTCCAGTGCATCTCAGGAGAAGCCCACCAGAGC 477 consensus_2360#1 ------------------------------------------------------------ consensus_2360#0 GACACCATTGGGGGAGACGAGACAGACCCGTACTGTTCAGTTCCCTGGTCCAGGATGAGA 537 consensus_2360#1 ------------------------------------------------------------ consensus_2360#0 ACTTCCATCATCTGATTTTCTCCCAACACCACCCACAGGTTCCTTTAGATGAGTCCAGAC 597 consensus_2360#1 ------------------------------------------------------------ consensus_2360#0 AGTACAACCACACCAGCACACCACCACGCATGCTTCACCCCGCTGCTCCCCCGCCCCACC 657 consensus_2360#1 ------------------------------------------------------------ consensus_2360#0 AGAGCCCCATCATGGTGGATCTACA 682 consensus_2360#1 ------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |