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Takifugu rubripes
cluster # 2380 cluster # 2380       Sequences # 5       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2380#0 length = 587 sequences # 2  
consensus_2380#1 length = 457 sequences # 1  
consensus_2380#2 length = 429 sequences # 1  
consensus_2380#3 length = 270 sequences # 1  

consensusID : consensus_2380#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 587
fasta sequence
                              [CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACGATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGACCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGATCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGTAAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTGTCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAACCTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATAGGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCAGAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA]

[+] EMBL FR0056463            [CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACGATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGACCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGATCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGTAAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTGTCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTTCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTG                                                                                                                                                                                                                  ]
[+] EMBL CA333377             [                                                                                                                                                                                                                                                                                                                      GACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGGAGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAACCTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATAGGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCAGAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA]


>consensus_2380#0 CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACGA TCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGAC CAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGAT CGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGTA AGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTGT CTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGGA GCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAACC TGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATAG GTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCAG AAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA



consensusID : consensus_2380#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 457
fasta sequence
                              [CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGTCCTCAACTACAAGCGACTGGTTTACTTGAACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGTTCAGAACGGCGGTGAAAAATCAAA]

[+] EMBL BU807854             [CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGTCCTCAACTACAAGCGACTGGTTTACTTGAACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGTTCAGAACGGCGGTGAAAAATCAAA]


>consensus_2380#1 CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGC CCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAG GGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTG TTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGA CCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCC TCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGTCC TCAACTACAAGCGACTGGTTTACTTGAACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGC AGGACTAAGCTGTTCAGAACGGCGGTGAAAAATCAAA



consensusID : consensus_2380#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 429
fasta sequence
                              [TCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGGCCT]

[+] EMBL FR0056106            [TCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTACGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGGCGGCCCTGATCCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCTTTTTGGCCT]


>consensus_2380#2 TCGGTGGGAAAGAATAGCCCGGGTCCTCGTGTGCCTCCTGGGCATACTGCTGTCTCTGTA CGCCTTCCACGTGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGT CAGTAGCTCCATCAGCTGTTCTAAAGTGTTCGGCTCCAGGTGGGGCCGAGGATTTGGACT CTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGAT CGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGGCGGCCCTGAT CCTCATGACCACGTCCATCATGTCGGTGGTGGGCTCGCTCTACCTGGGCTACATCCTCTA CTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACGCGCTGAACTTCATCCT TTTTGGCCT



consensusID : consensus_2380#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 270
fasta sequence
                              [ACACTCGAGCACCACGGTCAACACCACAGACACCGGTCAGGTCCACATCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCACGGCAGCAGGCGGTCCGCCGTGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGAGGACGGGGGA]

[+] EMBL FR0063351            [ACACTCGAGCACCACGGTCAACACCACAGACACCGGTCAGGTCCACATCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCACGGCAGCAGGCGGTCCGCCGTGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGCACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGAGGACGGGGGA]


>consensus_2380#3 ACACTCGAGCACCACGGTCAACACCACAGACACCGGTCAGGTCCACATCTAGAGGGAGAT AAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCACGGCAGCAGGCGG TCCGCCGTGGTGGGGCCGAGGATTTGGACTCTTGGGCTCCATTTTTGGGAATGACAGCGC ACTGAACCAACCCAACAGCGTCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGG GACCGCTGGAGTCCAGAGGAGGACGGGGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2380#1      CCAGACAGCGATGGCGGCGCCCGTCCTGAGAGTATCCACCCCTCGGTGGGAAAGAATAGC 60
consensus_2380#2      ------------------------------------------TCGGTGGGAAAGAATAGC 18
consensus_2380#3      ------------------------------------------------------------
consensus_2380#0      -CCGTCTCCAAATGGCGACAGACATCGAGAGGCTGGTCTCTTTCGAAGAGGCATATTACG 59
                                                                                  

consensus_2380#1      CCGGGTCC---TCGTGTGCCTCCTGGGCATACTGCTGTCTC-TGTACGCCTT---CCACG 113
consensus_2380#2      CCGGGTCC---TCGTGTGCCTCCTGGGCATACTGCTGTCTC-TGTACGCCTT---CCACG 71
consensus_2380#3      ----ACAC---TCGAGCACCACG-GTCAACACCACAGACAC-CGGTCAGGT----CCACA 47
consensus_2380#0      ATCAATACGATTACTATAATCTGATGGAATACTCATGCCACGCGCGCGGCAAAGGCAGGA 119
                             *   *                * **    * * *  *  *        *    

consensus_2380#1      TGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCA 173
consensus_2380#2      TGGAGAGGGAACATGCTCGGGATCCCAGTTATAAGGCTTTGTGCGACGTCAGTAGCTCCA 131
consensus_2380#3      TCTAGAGGGAGATAAGAAGAAGGCCATGAAGCGAGGGCCGCTGCGGGATCCGGGTCAGCA 107
consensus_2380#0      CCAAGAGGGAGATCGAGCTGAACACGAACCGCCACAGCCCCGCAGGACACGAGAGGAAGA 179
                         *******              *        *          *    *         *

consensus_2380#1      TCA----GCTGTTCTAAAGTGTTCGGCTCCAGGAATGACGGTCAGTGCGATGGCGGCCCT 229
consensus_2380#2      TCA----GCTGTTCTAAAGTGTTCGGCTCCAGGTG----GGGCCGAGGATTTGGACTCTT 183
consensus_2380#3      -CG----GCAGC----AGGCGGTCCGCCGTGGTGG-----GGCCGAGGATTTGGACTCTT 153
consensus_2380#0      TCGTGGAAAAATTTCAGAACAGCGAGATGAAGCGCAGAAGGACCAAGAGTTCGCCGTCGT 239
                       *                       *     *        * *   *   * *    * *

consensus_2380#1      GAT----CCTCATGACCACGTCCATCA----TGTCGGTGGTGG-GCTCGCTCTAC-CTGG 279
consensus_2380#2      GGG----CTCCAT--TTTTGGGAATGA----CAGCG-CACTGA-ACCAACCCAAC-AGCG 230
consensus_2380#3      GGG----CTCCAT--TTTTGGGAATGA----CAGCG-CACTGA-ACCAACCCAAC-AGCG 200
consensus_2380#0      AAGGGCCCCCCTCGCTTCTCCAGGTGAGGTGTAGCGGTGCAGATGTGGACCTGACCGGTG 299
                             *  *             * *       **     *       *   **    *

consensus_2380#1      GCTAC---ATCCTCTACTTTGTCCTCAAGGACCTGTGCGTCATCTGCGTCACCACGTACG 336
consensus_2380#2      TCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGAATGACGGTCAGTGCGATGG 290
consensus_2380#3      TCTACGGGATCGTCTTTTACGCCTTCCAGCTTTTACTAGGGACCGCTGGAGTCCAGAGGA 260
consensus_2380#0      TCTGTGGTGTTGACCGTGGTGCTCGAGTGTCGTCTCTGCCTTCCCCGACCCACCGAACGG 359
                       **      *   *      *       *                               

consensus_2380#1      CG---CTGAACTTCAT--CCTTTT---TGTCCTCAACTACAAGCGACTGGTT-TACTTGA 387
consensus_2380#2      CGGCCCTGATCCTCATGACCACGT---CCATCATGTCGGTGGTGGGCTCGCTCTACCTGG 347
consensus_2380#3      GGACGGGGGA-------------------------------------------------- 270
consensus_2380#0      AGCCTGTGACTCCCGCTGCCCCGCAGGCGGTCGTTAAACGGCTCAACATTCCACACTAAC 419
                       *     *                                                    

consensus_2380#1      ACGAGGCCTGGAAGCAGAAGCTCCAGGCCAAGCAGGACTAAGCTGT-TCAGAACGG---- 442
consensus_2380#2      GCTACATCCTCTACTTTGTCCTCAAGGACCTGTGCGTC--ATCTGCGTCACCACGT---- 401
consensus_2380#3      ------------------------------------------------------------
consensus_2380#0      CTGCAACTAGATCTTTGGCTCTCAAGTTACCGCCTGTGCAAGAATAGTTCCTGTTTTATA 479
                                                                                  

consensus_2380#1      CGGTGAAAAATCAAA--------------------------------------------- 457
consensus_2380#2      ACGCGCTGAACTTCATCCTTTTTGGCCT-------------------------------- 429
consensus_2380#3      ------------------------------------------------------------
consensus_2380#0      GGTCATTGGTGTGTGTGCTTCATAGCTATATTTGCGCGTTTAGTCACTTCTGTGGGTGCA 539
                                                                                  

consensus_2380#1      ------------------------------------------------
consensus_2380#2      ------------------------------------------------
consensus_2380#3      ------------------------------------------------
consensus_2380#0      GAAGACGTGCTGGATTTTAATTCTATTGAAATAAATGTGATTAAAACA 587
                                                                      




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)