These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2383#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 874 fasta sequence [TTTCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGATTCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTACACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCTCCTGGTCTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACATCTGTTGCAGCCAATCAGAGAGCTCACGAAAAACTGGGACATCGATGTGGCAGCAGCGTTAAATGACTATTTAGAAGAGCTGGATGAGATGTGCATCACCTTTGATGGTGGCAAAACAGGGCTGAATTTTGCAGAAGCTGCTTTGCTGATTCAAGGTTCTACCAGCATTTACAGCAAAAAGGTGGAGCTCCTCCACAGTCTGGTTTACCAAACCCTGGAGTACATCAGTGAGAAGAACAGGAAACGCAACAAACAGACGGCCGAGGCTCAGCAGGGGGACACAGACGGAGCACACAGTGACCACGATGAGCATTTCACACAGTTGGACCTGGACACGGCTGAGGACTCACACAAGAATCACTCCACAACAACTGCTCTGGTGGGTCCCCTCCCTCCGGAGTCTCTTCTTCCTCCTGAGAGCAGAGAGAAACTCAAACTTCCTCTGATCAGTCTGAAGGGTGAGACGCTGTGCAGTGTGAAGGACTTCAGGATCAACCTCTTCATTCCAGGAGCTGAAGATATGATTGTGCTGCTGCTGGGATCAGCAGCCTTC] [+] EMBL BU807641 [TTTCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGATTCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTACACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCTCCTGGTCTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACATCTGTTGCAGCCAATCAGAGAGCTCACGAAAAACTGGGACATCGATGTGGCAGCAGCGTTAAATGACTATTTAGAAGAGCTGGATGAGATGTGCATCACCTTTGATGGTGGCAAAACAGGGCTGAATTTTGCAGAAGCTGCTTTGCTGATTCAAGGTTCTACCAGCATTTACAGCAAAAAGGTGGAGCTCCTCCACAGTCTGGTTTACCAAACCCTGGAGTACATCAGTGAGAAGAACAGGAAACGCAACAAACAGACGGCCGAGGCTCAGCAGGGGGACACAGACGGAGCACACAGTGACCA ] [+] EMBL FR0061561 [ TGGTTTACCAAACCCTGGAGTACATCAGTGAGAAGAACAGGAAACGCAACAAACAGACGGCCGAGGCTCAGCAGGGGGACACAGACGGAGCACACAGTGACCACGATGAGCATTTCACACAGTTGGACCTGGACACGGCTGAGGACTCACACAAGAATCACTCCACAACAACTGCTCTGGTGGGTCCCCTCCCTCCGGAGTCTCTTCTTCCTCCTGAGAGCAGAGAGAAACTCAAACTTCCTCTGATCAGTCTGAAGGGTGAGACGCTGTGCAGTGTGAAGGACTTCAGGATCAACCTCTTCATTCCAGGAGCTGAAGATATGATTGTGCTGCTGCTGGGATCAGCAGCCTTC] consensusID : consensus_2383#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 615 fasta sequence [TACTGCGCGGGCTGTTTGACTGTTTCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGATGTTGTGTTGCAGATTCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTACACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGATCCCTGGTCTCTCTGGTCTCTCTGGATCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGNCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACATCTGTTGCAGCCAATCAGAGAGCTCACGAAAAACTGTGACATCGATGTGGCAGCAGCGTTAAATGACTATTTAGAAGAGCTGGATGAGATGTGCATCACCTTTGATGGTGGCAAAACAAGGCTGAATTTTGCAGAAACTGCTTTGCTGATTCAAGGTTCTACCAGCATTTACAGCAAAAAGGTGGAGCTCCTCCACAGTCTGGTTTGCCAAACCCTGGAGTACATCAGTGAGAAGAACAGGAAACGCTACAAACAGACG] [+] EMBL CA590729 [TACTGCGCGGGCTGTTTGACTGTTTCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGATGTTGTGTTGCAGATTCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTACACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACATCTGTTGCAGCCAATCAGAGAGCTCACGAAAAACTGTGACATCGATGTGGCAGCAGCGTTAAATGACTATTTAGAAGAGCTGGATGAGATGTGCATCACCTTTGATGGTGGCAAAACAAGGCTGAATTTTGCAGAAACTGCTTTGCTGATTCAAGGTTCTACCAGCATTTACAGCAAAAAGGTGGAGCTCCTCCACAGTCTGGTTTGCCAAACCCTGGAGTACATCAGTGAGAAGAACAGGAAACGCTACAAACAGACG] [+] EMBL FR0060349 [ CCCGACTGTTGCCCGGCTGTTTGGTCGATGTTGTGTTGCAGATTCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTACACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGATCCCTGGTCTCTCTGGTCTCTCTGGATCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGNCTCCCTGGTCTCT ] consensusID : consensus_2383#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [TACTGCGCGGGCTGTTTGACTGTTTCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGATTCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTACACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTCTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTCTCCCTGGTCTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGCCTCTCTGGTTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCACCCTGGTCTCTCTGGTCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACATCTGTTGCAGCCAATCAGAGAGCTCACGAAAAACTGGGACATCGATGTGGCAGCAGCG] [+] EMBL BU807552 [TACTGCGCGGGCTGTTTGACTGTTTCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGATTCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTACACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTCTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTCTCCCTGGTCTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCCCTGGCCTCTCTGGTTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCACCCTGGTCTCTCTGGTCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACATCTGTTGCAGCCAATCAGAGAGCTCACGAAAAACTGGGACATCGATGTGGCAGCAGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2383#0 ----------------------TTTCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTGCC 38 consensus_2383#1 TACTGCGCGGGCTGTTTGACTGTTTCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTGCC 60 consensus_2383#2 TACTGCGCGGGCTGTTTGACTGTTTCCCGGCTGTTGCCCGACTGTTTCCCGGCTGTTGCC 60 ************************ ************* consensus_2383#0 CGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGAT 98 consensus_2383#1 CGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGAT 120 consensus_2383#2 CGACTGTTTCCCGGCTGTTGCCCGGCTGTTGCCCGACTGTTGCCCGGCTGTTTGGTCGAT 120 ************************************************************ consensus_2383#0 --------------TCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTAC 144 consensus_2383#1 GTTGTGTTGCAGATTCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTAC 180 consensus_2383#2 --------------TCCAGAGTCGCGCTGTGGCGAAAACTTCAATAAAATACGAATCTAC 166 ********************************************** consensus_2383#0 ACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGG 204 consensus_2383#1 ACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGATCCCTGGTCTCTCTGG 240 consensus_2383#2 ACCAAGCTTGGGCCTGGTCTCTCTGGTTCCCTGGTCTCT--------CTGGTCTCCCTGG 218 *************************************** ******** **** consensus_2383#0 TCTCTCTGGTTCCCTGGTCTCTCTGGTTCTCCTGGTCTCCCTGGTCTCTCTGGTCTCTCT 264 consensus_2383#1 TCTCTCTGGATCCCTGGTCTCTCTGGTTC-CCTGGTCTCCCTGGTCTCTCTGGTCTCTCT 299 consensus_2383#2 TCTCTCTGGTTCCCTGGTCTCTCTGGTTC-CCTGGTCTCCCTGGTCTCTCTGGTTCCCTG 277 ********* ******************* ************************ * consensus_2383#0 GGTTCCCTGGTCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACATCT 324 consensus_2383#1 GGTTCCCTGGNCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACATCT 359 consensus_2383#2 GTCTCTCTGGTCTCCCTGGTCTCCCT----GGTCTCTCTGGTTCCCTGGTCT-CTCTGGT 332 * ** **** ************ ** ** ** * * * * * * * * consensus_2383#0 GTTGCAGCCAATCAGAGAGCTCACGAAAAACTGGGACATCGATGTGGCAGCAGCGTTAAA 384 consensus_2383#1 GTTGCAGCCAATCAGAGAGCTCACGAAAAACTGTGACATCGATGTGGCAGCAGCGTTAAA 419 consensus_2383#2 TCCCTGGTCTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCTCTCTGGTTCCCTG-- 390 * * * * *** * *** * * * * * * * * consensus_2383#0 TGACTATTTAGAAGAGCTGGATGAGATGTGCATC-ACCTTTGATGGTGGCAAAACAGGGC 443 consensus_2383#1 TGACTATTTAGAAGAGCTGGATGAGATGTGCATC-ACCTTTGATGGTGGCAAAACAAGGC 478 consensus_2383#2 -GTCTCCCTGGCCTCTCTGGTTCCCTGGTCTCTCTGGTCTCTCTGGTTCCCTGGTCACCC 449 * ** * * **** * ** ** * **** * * consensus_2383#0 TGAATTTTGCAGAAGCTGCTTTGCTGATTCAAGGT-TCTACCAGCATTTACAGCAAAAAG 502 consensus_2383#1 TGAATTTTGCAGAAACTGCTTTGCTGATTCAAGGT-TCTACCAGCATTTACAGCAAAAAG 537 consensus_2383#2 TGGTCTCTCTGGTCTCCCTGGTCTCTCTTCATGGAGTCCACAGAAAGCCGCTTTGCACAT 509 ** * * * * * **** ** ** ** * * * * consensus_2383#0 GTGGAGCTCCTCCACAGTCTGGTTTACCAAACCCTGGAGTACATCAGTGAGAAGAACAGG 562 consensus_2383#1 GTGGAGCTCCTCCACAGTCTGGTTTGCCAAACCCTGGAGTACATCAGTGAGAAGAACAGG 597 consensus_2383#2 CTGTTGCAGCCAATCAGAG-AGCTCACGAAAAACTGGGACATCGATGTGGCAGCAGCG-- 566 ** ** * *** * * * *** **** * *** * * * consensus_2383#0 AAACGCAACAAACAGACGGCCGAGGCTCAGCAGGGGGACACAGACGGAGCACACAGTGAC 622 consensus_2383#1 AAACGCTACAAACAGACG------------------------------------------ 615 consensus_2383#2 ------------------------------------------------------------ consensus_2383#0 CACGATGAGCATTTCACACAGTTGGACCTGGACACGGCTGAGGACTCACACAAGAATCAC 682 consensus_2383#1 ------------------------------------------------------------ consensus_2383#2 ------------------------------------------------------------ consensus_2383#0 TCCACAACAACTGCTCTGGTGGGTCCCCTCCCTCCGGAGTCTCTTCTTCCTCCTGAGAGC 742 consensus_2383#1 ------------------------------------------------------------ consensus_2383#2 ------------------------------------------------------------ consensus_2383#0 AGAGAGAAACTCAAACTTCCTCTGATCAGTCTGAAGGGTGAGACGCTGTGCAGTGTGAAG 802 consensus_2383#1 ------------------------------------------------------------ consensus_2383#2 ------------------------------------------------------------ consensus_2383#0 GACTTCAGGATCAACCTCTTCATTCCAGGAGCTGAAGATATGATTGTGCTGCTGCTGGGA 862 consensus_2383#1 ------------------------------------------------------------ consensus_2383#2 ------------------------------------------------------------ consensus_2383#0 TCAGCAGCCTTC 874 consensus_2383#1 ------------ consensus_2383#2 ------------ |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |