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Takifugu rubripes
cluster # 2388 cluster # 2388       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2388#0 length = 828 sequences # 2  
consensus_2388#1 length = 530 sequences # 4  

consensusID : consensus_2388#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 828
fasta sequence
                              [ACGTCCCCTGCTGGTTCCGAACCGCGCGAGCGAGCACTTAAGGAGCGCTTAGAAGACCAGGCATCGTCGTCATCGTCGTCCTCTCGCAACCATGACTGACAGGAAAGCCGTGATTAAGAACGCGGACATGTCCGAGGACATGCAGCAGGACGCGGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAACATCGAGAAGGACATCGCAGCCTTCATCAAGAAGGAGTTTGACAAGAAGTACAATCCCACCTGGCACTGCATCGTCGGGAGGAACTTCGGCAGCTACGTGACCCACGAGACGAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCAGGCTGAAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAATGCACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGCACATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTAGTTGCCATGTTAATGCAACTAAACCTTTCTTTCCCCCCCCTTGTTTTGCCTTTAAATTCAGTTGTACGAGACATTAACATGGCCCTTGATTGTATAAATAAAGGAAAGCTGTAGAATGTAGTCGTGCATCGGCTTTCCTTCACACCAAACTCCGAGTGTTGGATTAGATGGTTTAAAAAAAATAAATAGTGTGAGCACCAGTTTAACAACCCCTCATAAAAATTGTGCATTTTTCGCGCCACTTTCAAGGGGAACGTTACCTGCAGGTGCCAACCCAAAACCTTCATGC]

[+] EMBL CA844733             [ACGTCCCCTGCTGGTTCCGAACCGCGCGAGCGAGCACTTAAGGAGCGCTTAGAAGACCAGGCATCGTCGTCATCGTCGTCCTCTCGCAACCATGACTGACAGGAAAGCCGTGATTAAGAACGCGGACATGTCCGAGGACATGCAGCAGGACGCGGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAACATCGAGAAGGACATCGCAGCCTTCATCAAGAAGGAGTTTGACAAGAAGTACAATCCCACCTGGCACTGCATCGTCGGGAGGAACTTCGGCAGCTACGTGACCCACGAGACGAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGTCATCCTGCTCTTCAAATCAGGCTGAAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAATGCACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGCACATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTAGTTGCCATGTTAATGCAACTAAACCT                                                                                                                                                                                                                                                                       ]
[+] EMBL CA329897             [                                                                                                                                                                                                                                                                                                  CCCACGAGACGAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCAGGCTGAAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAATGCACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGCACATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTAGTTGCCATGTTAATGCAACTAAACCTTTCTTTCCCCCCCCTTGTTTTGCCTTTAAATTCAGTTGTACGAGACATTAACATGGCCCTTGATTGTATAAATAAAGGAAAGCTGTAGAATGTAGTCGTGCATCGGCTTTCCTTCACACCAAACTCCGAGTGTTGGATTAGATGGTTTAAAAAAAATAAATAGTGTGAGCACCAGTTTAACAACCCCTCATAAAAATTGTGCATTTTTCGCGCCACTTTCAAGGGGAACGTTACCTGCAGGTGCCAACCCAAAACCTTCATGC]


>consensus_2388#0 ACGTCCCCTGCTGGTTCCGAACCGCGCGAGCGAGCACTTAAGGAGCGCTTAGAAGACCAG GCATCGTCGTCATCGTCGTCCTCTCGCAACCATGACTGACAGGAAAGCCGTGATTAAGAA CGCGGACATGTCCGAGGACATGCAGCAGGACGCGGTGGACTGTGCCACCCAGGCCATGGA GAAGTACAACATCGAGAAGGACATCGCAGCCTTCATCAAGAAGGAGTTTGACAAGAAGTA CAATCCCACCTGGCACTGCATCGTCGGGAGGAACTTCGGCAGCTACGTGACCCACGAGAC GAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCAGGCTG AAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAATG CACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGCA CATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTAG TTGCCATGTTAATGCAACTAAACCTTTCTTTCCCCCCCCTTGTTTTGCCTTTAAATTCAG TTGTACGAGACATTAACATGGCCCTTGATTGTATAAATAAAGGAAAGCTGTAGAATGTAG TCGTGCATCGGCTTTCCTTCACACCAAACTCCGAGTGTTGGATTAGATGGTTTAAAAAAA ATAAATAGTGTGAGCACCAGTTTAACAACCCCTCATAAAAATTGTGCATTTTTCGCGCCA CTTTCAAGGGGAACGTTACCTGCAGGTGCCAACCCAAAACCTTCATGC



consensusID : consensus_2388#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 530
fasta sequence
                              [CACTTCGCGAGAGTTGTCGCTGCCAGTGCTGTCCTCTCTTCAAAGATCAATTTACAGCACACGGAAGAGCAAAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAAATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGACCTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCAAGCACTTCATTTATTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCTGGCTGAAGGGAGGAAGGAAGGAATGTCTTCATGAGCTGACTGTAAACACTATACTGACTGACTCCACAAAGGCACTTATCATTCCTTGGCGAGGGGCCGCTGCCTTTTCTGTTGATTTCTATGTTCCATTTTTGAGGATTACAAAAACTGTGGCCATGTTAAAAAAAAAATAAACAGTTCTATT]

[+] EMBL FR0057218            [CACTTCGCGAGAGTTGTCGCTGCCAGTGCTGTCCTCTCTTCAAAGATCAATTTACAGCACACGGAAGAGCAAAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAAATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGACCTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCA                                                                                                                                                                                                                                             ]
[+] EMBL CA844543             [                                   CTCTTCAAAGATCAATTTACAGCACACGGAAGAGCACAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAAATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGACCTGGCACTGCATCGTGNGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCAAGCACTTCATTTATTTCTACCTGGGCCAGGTGGCCATCCTG                                                                                                                                                                                                    ]
[+] EMBL CA847257             [                                                                                  ATGTCTGAAAGCCTGGCAGTGATCAAAAATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGACCTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCAAGCACTTCATTTATTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCTGGCTGAAGGGAGGAAGGAAGGAATGTCTTCATGAGCTGACTGTAAACACTATACTGACTGACTCCACAAAGGCACTTATCATTCCTTGGCGAGGGGCCGCTGCCTTTTCTGTTGATTTCTATGTTCCATTTTTGAGGATTACAAAAACTGTGGCCATGTTAAAAAAATA               ]
[+] EMBL CA330722             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      CTGTTGATTTCTATGTTCCATTTTTGAGGATTACAAAAACTGTGGCCATGTTAAAAAAAAAATAAACAGTTCTATT]


>consensus_2388#1 CACTTCGCGAGAGTTGTCGCTGCCAGTGCTGTCCTCTCTTCAAAGATCAATTTACAGCAC ACGGAAGAGCAAAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAAATGCCGACAT GTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAA CATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGAC CTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCAAGCACTT CATTTATTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCTGGCTGAAGGGAGGA AGGAAGGAATGTCTTCATGAGCTGACTGTAAACACTATACTGACTGACTCCACAAAGGCA CTTATCATTCCTTGGCGAGGGGCCGCTGCCTTTTCTGTTGATTTCTATGTTCCATTTTTG AGGATTACAAAAACTGTGGCCATGTTAAAAAAAAAATAAACAGTTCTATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2388#0      ACGTCCCCTGCTGGTTCCGAACCGCGCGAGCGAGCACTTAAGGAGCGCTTAGAAGACCAG 60
consensus_2388#1      --------CACTTCGCGAGAGTTGTCGCTGCCAGTGCT--GTCCTCTCTTCAAAGATCAA 50
                                **      **   *     ** **  **       * ***  **** ** 

consensus_2388#0      GCATCGTCGT-CATCGTCGTCCTCTCGCAACCATGACTGACAGGAAAGCCGTGATTAAGA 119
consensus_2388#1      TTTACAGCACACGGAAGAGCAAAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAA 110
                          *  *   *      *       ********* **** ***** ** ***** ** *

consensus_2388#0      ACGCGGACATGTCCGAGGACATGCAGCAGGACGCGGTGGACTGTGCCACCCAGGCCATGG 179
consensus_2388#1      ATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGG 170
                      * ** ******** ******************** ***** ** ***** *****  ***

consensus_2388#0      AGAAGTACAACATCGAGAAGGACATCGCAGCCTTCATCAAGAAGGAGTTTGACAAGAAGT 239
consensus_2388#1      AGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAAT 230
                      ****** ****** ******** ***** **** ****** ***************** *

consensus_2388#0      ACAATCCCACCTGGCACTGCATCGTCGGGAGGAACTTCGGCAGCTACGTGACCCACGAGA 299
consensus_2388#1      ATAACCCGACCTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGA 290
                      * ** ** ***************** ** *********************** *******

consensus_2388#0      CGAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCAGGCT 359
consensus_2388#1      CCAAGCACTTCATTTATTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCTGGCT 350
                      * ***** ******** ************************************** ****

consensus_2388#0      GAAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAAT 419
consensus_2388#1      GAAG----------GGAGGAAGGAAGGAATGTCTT-----CATGAGCT--GACTGTAAAC 393
                      ***           **** *  ** **  * * **     * * * **   *    *** 

consensus_2388#0      GCACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGC 479
consensus_2388#1      ACTATACTGACTGACTCCACAAAGGCACT--TATCATTCCTTGGCGAGG--GGCCGCTGC 449
                       *  *  ** ****     *  *  ****  ** *** ** *  *** *    **  ***

consensus_2388#0      ACATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTA 539
consensus_2388#1      CTTTTCTGTTGATTTCTATGTTCCATT-TTTGAGGATTACAAAAACT------------- 495
                         **    **   ****   *   *  * **    *****  ** *             

consensus_2388#0      GTTGCCATGTTAATGCAAC--TAAACCTTTCTTTCCCCCCCCTTGTTTTGCCTTTAAATT 597
consensus_2388#1      GTGGCCATGTTAAAAAAAAAATAAACAGTTCTATT------------------------- 530
                      ** **********   **   *****  **** *                          

consensus_2388#0      CAGTTGTACGAGACATTAACATGGCCCTTGATTGTATAAATAAAGGAAAGCTGTAGAATG 657
consensus_2388#1      ------------------------------------------------------------
                                                                                  

consensus_2388#0      TAGTCGTGCATCGGCTTTCCTTCACACCAAACTCCGAGTGTTGGATTAGATGGTTTAAAA 717
consensus_2388#1      ------------------------------------------------------------
                                                                                  

consensus_2388#0      AAAATAAATAGTGTGAGCACCAGTTTAACAACCCCTCATAAAAATTGTGCATTTTTCGCG 777
consensus_2388#1      ------------------------------------------------------------
                                                                                  

consensus_2388#0      CCACTTTCAAGGGGAACGTTACCTGCAGGTGCCAACCCAAAACCTTCATGC 828
consensus_2388#1      ---------------------------------------------------
                                                                         




Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner    (hubert.wassner@noos.fr)