These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2388#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 828 fasta sequence [ACGTCCCCTGCTGGTTCCGAACCGCGCGAGCGAGCACTTAAGGAGCGCTTAGAAGACCAGGCATCGTCGTCATCGTCGTCCTCTCGCAACCATGACTGACAGGAAAGCCGTGATTAAGAACGCGGACATGTCCGAGGACATGCAGCAGGACGCGGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAACATCGAGAAGGACATCGCAGCCTTCATCAAGAAGGAGTTTGACAAGAAGTACAATCCCACCTGGCACTGCATCGTCGGGAGGAACTTCGGCAGCTACGTGACCCACGAGACGAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCAGGCTGAAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAATGCACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGCACATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTAGTTGCCATGTTAATGCAACTAAACCTTTCTTTCCCCCCCCTTGTTTTGCCTTTAAATTCAGTTGTACGAGACATTAACATGGCCCTTGATTGTATAAATAAAGGAAAGCTGTAGAATGTAGTCGTGCATCGGCTTTCCTTCACACCAAACTCCGAGTGTTGGATTAGATGGTTTAAAAAAAATAAATAGTGTGAGCACCAGTTTAACAACCCCTCATAAAAATTGTGCATTTTTCGCGCCACTTTCAAGGGGAACGTTACCTGCAGGTGCCAACCCAAAACCTTCATGC] [+] EMBL CA844733 [ACGTCCCCTGCTGGTTCCGAACCGCGCGAGCGAGCACTTAAGGAGCGCTTAGAAGACCAGGCATCGTCGTCATCGTCGTCCTCTCGCAACCATGACTGACAGGAAAGCCGTGATTAAGAACGCGGACATGTCCGAGGACATGCAGCAGGACGCGGTGGACTGTGCCACCCAGGCCATGGAGAAGTACAACATCGAGAAGGACATCGCAGCCTTCATCAAGAAGGAGTTTGACAAGAAGTACAATCCCACCTGGCACTGCATCGTCGGGAGGAACTTCGGCAGCTACGTGACCCACGAGACGAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGTCATCCTGCTCTTCAAATCAGGCTGAAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAATGCACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGCACATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTAGTTGCCATGTTAATGCAACTAAACCT ] [+] EMBL CA329897 [ CCCACGAGACGAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCAGGCTGAAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAATGCACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGCACATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTAGTTGCCATGTTAATGCAACTAAACCTTTCTTTCCCCCCCCTTGTTTTGCCTTTAAATTCAGTTGTACGAGACATTAACATGGCCCTTGATTGTATAAATAAAGGAAAGCTGTAGAATGTAGTCGTGCATCGGCTTTCCTTCACACCAAACTCCGAGTGTTGGATTAGATGGTTTAAAAAAAATAAATAGTGTGAGCACCAGTTTAACAACCCCTCATAAAAATTGTGCATTTTTCGCGCCACTTTCAAGGGGAACGTTACCTGCAGGTGCCAACCCAAAACCTTCATGC] consensusID : consensus_2388#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 530 fasta sequence [CACTTCGCGAGAGTTGTCGCTGCCAGTGCTGTCCTCTCTTCAAAGATCAATTTACAGCACACGGAAGAGCAAAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAAATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGACCTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCAAGCACTTCATTTATTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCTGGCTGAAGGGAGGAAGGAAGGAATGTCTTCATGAGCTGACTGTAAACACTATACTGACTGACTCCACAAAGGCACTTATCATTCCTTGGCGAGGGGCCGCTGCCTTTTCTGTTGATTTCTATGTTCCATTTTTGAGGATTACAAAAACTGTGGCCATGTTAAAAAAAAAATAAACAGTTCTATT] [+] EMBL FR0057218 [CACTTCGCGAGAGTTGTCGCTGCCAGTGCTGTCCTCTCTTCAAAGATCAATTTACAGCACACGGAAGAGCAAAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAAATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGACCTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCA ] [+] EMBL CA844543 [ CTCTTCAAAGATCAATTTACAGCACACGGAAGAGCACAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAAATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGACCTGGCACTGCATCGTGNGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCAAGCACTTCATTTATTTCTACCTGGGCCAGGTGGCCATCCTG ] [+] EMBL CA847257 [ ATGTCTGAAAGCCTGGCAGTGATCAAAAATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGGAGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAATATAACCCGACCTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGACCAAGCACTTCATTTATTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCTGGCTGAAGGGAGGAAGGAAGGAATGTCTTCATGAGCTGACTGTAAACACTATACTGACTGACTCCACAAAGGCACTTATCATTCCTTGGCGAGGGGCCGCTGCCTTTTCTGTTGATTTCTATGTTCCATTTTTGAGGATTACAAAAACTGTGGCCATGTTAAAAAAATA ] [+] EMBL CA330722 [ CTGTTGATTTCTATGTTCCATTTTTGAGGATTACAAAAACTGTGGCCATGTTAAAAAAAAAATAAACAGTTCTATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2388#0 ACGTCCCCTGCTGGTTCCGAACCGCGCGAGCGAGCACTTAAGGAGCGCTTAGAAGACCAG 60 consensus_2388#1 --------CACTTCGCGAGAGTTGTCGCTGCCAGTGCT--GTCCTCTCTTCAAAGATCAA 50 ** ** * ** ** ** * *** **** ** consensus_2388#0 GCATCGTCGT-CATCGTCGTCCTCTCGCAACCATGACTGACAGGAAAGCCGTGATTAAGA 119 consensus_2388#1 TTTACAGCACACGGAAGAGCAAAAGAGCAACCATGTCTGAAAGGAAGGCAGTGATCAAAA 110 * * * * ********* **** ***** ** ***** ** * consensus_2388#0 ACGCGGACATGTCCGAGGACATGCAGCAGGACGCGGTGGACTGTGCCACCCAGGCCATGG 179 consensus_2388#1 ATGCCGACATGTCGGAGGACATGCAGCAGGACGCCGTGGAGTGCGCCACGCAGGCTCTGG 170 * ** ******** ******************** ***** ** ***** ***** *** consensus_2388#0 AGAAGTACAACATCGAGAAGGACATCGCAGCCTTCATCAAGAAGGAGTTTGACAAGAAGT 239 consensus_2388#1 AGAAGTTCAACATTGAGAAGGATATCGCTGCCTACATCAAAAAGGAGTTTGACAAGAAAT 230 ****** ****** ******** ***** **** ****** ***************** * consensus_2388#0 ACAATCCCACCTGGCACTGCATCGTCGGGAGGAACTTCGGCAGCTACGTGACCCACGAGA 299 consensus_2388#1 ATAACCCGACCTGGCACTGCATCGTGGGAAGGAACTTCGGCAGCTACGTGACTCACGAGA 290 * ** ** ***************** ** *********************** ******* consensus_2388#0 CGAAGCATTTCATTTACTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCAGGCT 359 consensus_2388#1 CCAAGCACTTCATTTATTTCTACCTGGGCCAGGTGGCCATCCTGCTCTTCAAATCTGGCT 350 * ***** ******** ************************************** **** consensus_2388#0 GAAAATTGTTCTTAGGAGCATTGAGGGTTTTTTTTTCCTCCCTAAACTTAAATCAGAAAT 419 consensus_2388#1 GAAG----------GGAGGAAGGAAGGAATGTCTT-----CATGAGCT--GACTGTAAAC 393 *** **** * ** ** * * ** * * * ** * *** consensus_2388#0 GCACTGGTGGCTGATGTGTCCCATACACTAATAACATACCATAACGATGCAAACCCGTGC 479 consensus_2388#1 ACTATACTGACTGACTCCACAAAGGCACT--TATCATTCCTTGGCGAGG--GGCCGCTGC 449 * * ** **** * * **** ** *** ** * *** * ** *** consensus_2388#0 ACATTTGCATGGACTCTACACTATTTAATATGTATGTTACAGTAAGTTTACTTTTCAGTA 539 consensus_2388#1 CTTTTCTGTTGATTTCTATGTTCCATT-TTTGAGGATTACAAAAACT------------- 495 ** ** **** * * * ** ***** ** * consensus_2388#0 GTTGCCATGTTAATGCAAC--TAAACCTTTCTTTCCCCCCCCTTGTTTTGCCTTTAAATT 597 consensus_2388#1 GTGGCCATGTTAAAAAAAAAATAAACAGTTCTATT------------------------- 530 ** ********** ** ***** **** * consensus_2388#0 CAGTTGTACGAGACATTAACATGGCCCTTGATTGTATAAATAAAGGAAAGCTGTAGAATG 657 consensus_2388#1 ------------------------------------------------------------ consensus_2388#0 TAGTCGTGCATCGGCTTTCCTTCACACCAAACTCCGAGTGTTGGATTAGATGGTTTAAAA 717 consensus_2388#1 ------------------------------------------------------------ consensus_2388#0 AAAATAAATAGTGTGAGCACCAGTTTAACAACCCCTCATAAAAATTGTGCATTTTTCGCG 777 consensus_2388#1 ------------------------------------------------------------ consensus_2388#0 CCACTTTCAAGGGGAACGTTACCTGCAGGTGCCAACCCAAAACCTTCATGC 828 consensus_2388#1 --------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |