These datas are free for academic use only, please contact me for any other use. Takifugu rubripes see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2403#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 624 fasta sequence [AAGGGGAGGAAGTGGACTCAGCTCTTTCACGTCTGCCGAGAGCGGCTGCTTACACTTCACCCTCGAACCCGAGCAGCACACATCTGGGTC--TCTTCGTCGTCATTCCGGACTGG-TACGAGAG-AGTTAAACCCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGGGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGGTCACGTTAACGGAAGCGAGCCAAGGGTTCGAGTCATGGAAGAACCCACCCCCCACCGGTTTATATGGAGTATTACTTCTTCAATGGTACCAATCCTTAAGGAATCCTGGGCAGGGCGGGGAAGGCAGCTGTTCAACAAATTGGACCATATACTTACAGGGAATACAGGCCACGGGAAAACATATCTTTCCTGGAGAACGGCACCAAGATCTACGCTCTGAACCCAAAGAGTTTT] [+] EMBL BU808538 [AAGGGGAGGAAGTGGACTCAGCTCTTTCACGTCTGCCGAGAGCGGCTGCTTACACTTCACCCTCGAACCCGAGCAGCACACATCTCCCTCTTTCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAACCCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAATCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGTGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGTTCACGTTAACGGAAGCGAGCCAAGTGTTCGAGTCATGGAAGAACCCA CCCCCACCGGTTTATATGGAGTATTACTTCTTCAATGTTACCAATCC TAAGGAATTCTTGGCAGG CGGGAAGGCAGCTGTTCAACAAATTGGACCATATACTTACAGGGAATACAGGCCACGGGAAAACATATCTTTCCTGGAGAACGGCACCAAGATCTACGCTCTGAACCCAAAGAGTTTT] [+] EMBL FR0059025 [ TCGAACCCGAGCAGCACACATCTGGGTC TCTTCGTCGTCATTCCGGACTGG TACGAGAG AGTTAAACCCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGGGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGGTCACGTTAACGGATGCGAGCCAAGGGTTCGAGTCTTGGAAGAACCCACCCCCCACCGTTTTATATGGAGTATTACTTCTTCAATGGTACCAATCCTTAAGGAATCTTGGGCAGGGCGGGGAAGGCAGC ] consensusID : consensus_2403#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 505 fasta sequence [CATCTCCCTCTTTGTACGTGCCGGCCAGGTTAACGTGGAGATATGTGTAAAAAAAAATTTTAACCTAAAAGTGCCAACGTATTTTAAGGGCCTTCGCTTGTGTTTTTACTCCAGCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAAC-CCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACC-GGCATCGTCAGCGCTCACCTCCTGATCGTGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGTTCACGTTAACGGAAGCGAGCCAAGTGTTCGAGTCATGGAAGAACCCACCCCCACCGGTTTATATGGAGAATTACTTCTTCAATGTTACCA] [+] EMBL FR0058080 [CATCTCCCTCTTTGTACGTGCCGGCCAGGTTAACGTGGAGATATGTGTAAAAAAAAATTTTAACCTAAAAGTGCCAACGTATTTTAAGGGCCTTCGCTTGTGTTTTTACTCCAGCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAAC CCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACC GGCATCGTCAGCGCTCACCTCCTGATC ] [+] EMBL FR0058257 [CATCTCCCTCTTTGTACGTGCCGGCCAGGTTAACGTGGAGATATGTGTAAAAAAAAATTTTAACCTAAAAGTGCCAACGTATTTTAAGGGCCTTCGCTTGTGTTTTTACTCCAGCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAAC CCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACC GGCATCGTCAGCGCTCACCTCCTGATC ] [+] EMBL FR0059177 [ AATTTTAACCTAAAAGGGCCGGCGTATTTTAAGGGCCTTCGCTTGCGCCTCTACTCCAGCTTCGACGTCATTCCGGACTGGTTACGAGAGTAGTTAAAC CCCCCTCAGTCTGCTGCTCAGGACACGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTGGGGGGGGGAAACTTTAATCCTCGACTTCAGGGAAGCCGGAAAGAGAGGACCGGCATCATGACGCGGAAATCCTGGGCCATTTACGCTACCGGGCATCGCAGCGGTTCACC ] [+] EMBL FR0059399 [ TTGTGTTTTTACTCCAGCTTCGTCGTCATTCCGGACTGGTTACGAGAGTAGTTAAACGGCGCCTCAGTCTGCTGCTCAGGACACGACGCACCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTGAAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAGATCCTGTGCCATTTACGCTACC GGCATCGTCAGCGCTCACCTCCTGATCGTGGGGATCGCCCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGTTCACGTTAACGGAAGCGAGCCAAGTGTTCGAGTCATGGAAGAACCCACCCCCACCGGTTTATATGGAGAATTACTTCTTCAATGTTACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2403#0 ------------AAGGGGAGGAAGTGGACTCAGCTCTTTCACGTCTGCCGAGAGCGGCT- 47 consensus_2403#1 CATCTCCCTCTTTGTACGTGCCGGCCAGGTTAACGTGGAGATATGTGTAAAAAAAAATTT 60 * * * * * * * * ** * * * consensus_2403#0 --GCTTACACTTCACCCTCGAACCCGAGCAGCACACATCTGGGTCT---------CTTCG 96 consensus_2403#1 TAACCTAAAAGT-GCCAACGTATTTTAAGGGCCTTCGCTTGTGTTTTTACTCCAGCTTCG 119 * ** * * ** ** * * ** * ** ** * ***** consensus_2403#0 TCGTCATTCCGGACTGGT-ACGAGAG-AGTTAAACCCCCCTCAGTCTGCTGCTCAGGACA 154 consensus_2403#1 TCGTCATTCCGGACTGGTTACGAGAGTAGTTAAACCCCCCTCAGTCTGCTGCTCAGGACA 179 ****************** ******* ********************************* consensus_2403#0 CGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTG 214 consensus_2403#1 CGACGGATCCCAACAAGCACCTTTCTCCAACTTAGCTATCTTTCTCTTTTTTGGGGGGTG 239 ************************************************************ consensus_2403#0 AAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAG 274 consensus_2403#1 AAACTTTAATCCTCGACTTCAGGGAAGCCGTAAAGAGAGGACCGGCATCATGACGCGGAG 299 ************************************************************ consensus_2403#0 ATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGGGGGGATCGC 334 consensus_2403#1 ATCCTGTGCCATTTACGCTACCGGCATCGTCAGCGCTCACCTCCTGATCGTGGGGATCGC 359 ************************************************** ********* consensus_2403#0 CCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGGTCAC 394 consensus_2403#1 CCTGGTCGTGGCTCAAGTCTTCCAAACAATGATCCACGAAAGGCTGAAAAAGGAGTTCAC 419 ******************************************************* **** consensus_2403#0 GTTAACGGAAGCGAGCCAAGGGTTCGAGTCATGGAAGAACCCACCCCCCACCGGTTTATA 454 consensus_2403#1 GTTAACGGAAGCGAGCCAAGTGTTCGAGTCATGGAAGAACCCACCCCC-ACCGGTTTATA 478 ******************** *************************** *********** consensus_2403#0 TGGAGTATTACTTCTTCAATGGTACCAATCCTTAAGGAATCCTGGGCAGGGCGGGGAAGG 514 consensus_2403#1 TGGAGAATTACTTCTTCAATGTTACCA--------------------------------- 505 ***** *************** ***** consensus_2403#0 CAGCTGTTCAACAAATTGGACCATATACTTACAGGGAATACAGGCCACGGGAAAACATAT 574 consensus_2403#1 ------------------------------------------------------------ consensus_2403#0 CTTTCCTGGAGAACGGCACCAAGATCTACGCTCTGAACCCAAAGAGTTTT 624 consensus_2403#1 -------------------------------------------------- |
Data build on Sat Aug 9 00:50:02 CEST 2003 by Hubert Wassner (hubert.wassner@noos.fr) |